Bra021665 (ATVT-1, HVT1)

Aliases : ATVT-1, HVT1

Description : not classified

Gene families : OG0010512 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra021665
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_166

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003993	acid phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004743	pyruvate kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005741	mitochondrial outer membrane	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005985	sucrose metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005986	sucrose biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006006	glucose metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006629	lipid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016791	phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016872	intramolecular lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030955	potassium ion binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031420	alkali metal ion binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031966	mitochondrial membrane	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031968	organelle outer membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0033897	ribonuclease T2 activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0050307	sucrose-phosphate phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0050308	sugar-phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070569	uridylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	896	982
IPR001650	Helicase_C	547	671
IPR001374	R3H_dom	27	80
IPR007502	Helicase-assoc_dom	736	827
IPR011545	DEAD/DEAH_box_helicase_dom	196	349

External Links

No external refs found!

Bra021665 (ATVT-1, HVT1)

Expression Profile

Co-expression Networks

Functional Annotation