Bra021387 (ARF1A1C, BEX1)

Aliases : ARF1A1C, BEX1

Description : ARF-GTPase *(ARF1)

Gene families : OG0001135 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001135_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra021387
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_220

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_chr3.03836	ARF1A1C, BEX1	ARF-GTPase *(ARF1)	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015078	proton transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016759	cellulose synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030243	cellulose metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030244	cellulose biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030896	checkpoint clamp complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006689	Small_GTPase_ARF/SAR	6	177

External Links

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Bra021387 (ARF1A1C, BEX1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation