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  5. Bra020904

Bra020904


Description : component *(SF3B2) of splicing factor 3B complex


Gene families : OG0014462 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra020904
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_154


Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004175 endopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004176 ATP-dependent peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005669 transcription factor TFIID complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022618 protein-RNA complex assembly IEP Brassica rapa GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071826 protein-RNA complex organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901264 carbohydrate derivative transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006568 PSP_pro-rich 304 349
IPR007180 DUF382 170 295
No external refs found!