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Bra002005 (PFU2, UBC23)


Aliases : PFU2, UBC23

Description : E2 ubiquitin-conjugating protein *(PHO2)


Gene families : OG0004554 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004554_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra002005
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_172

Target Alias Description ECC score Gene Family Method Actions
Bra017778 PFU2, UBC23 E2 ubiquitin-conjugating protein *(PHO2) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0005976 polysaccharide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009314 response to radiation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009416 response to light stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009581 detection of external stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009582 detection of abiotic stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009583 detection of light stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009584 detection of visible light IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009605 response to external stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009628 response to abiotic stimulus IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016160 amylase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016161 beta-amylase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051606 detection of stimulus IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 196 255
IPR000504 RRM_dom 291 360
IPR000504 RRM_dom 488 541
IPR029123 RBM39_linker 382 482
IPR000608 UBQ-conjugat_E2 1416 1549
No external refs found!