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  5. Bra020001

Bra020001


Description : not classified


Gene families : OG0000623 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra020001
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_256

Target Alias Description ECC score Gene Family Method Actions
Bra022363 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000315 organellar large ribosomal subunit IEP Brassica rapa GO terms from Neighborhoods
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003735 structural constituent of ribosome IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005762 mitochondrial large ribosomal subunit IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006412 translation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043603 amide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098798 mitochondrial protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140223 general transcription initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990234 transferase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 476 525
IPR002885 Pentatricopeptide_rpt 266 315
IPR002885 Pentatricopeptide_rpt 371 420
IPR002885 Pentatricopeptide_rpt 339 369
IPR002885 Pentatricopeptide_rpt 228 259
IPR002885 Pentatricopeptide_rpt 437 469
No external refs found!