Bra019821 (AtRAV1, RAV1, EDF4)

Aliases : AtRAV1, RAV1, EDF4

Description : RAV/NGATHA-type transcription factor. AP2-RAV-type transcription factor *(EDF)

Gene families : OG0001166 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001166_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra019821
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_29

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra011002	EDF1, AtTEM1, TEM1	AP2-RAV-type transcription factor *(EDF)....	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006887	exocytosis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0010181	FMN binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032940	secretion by cell	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046903	secretion	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0099023	vesicle tethering complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0140352	export from cell	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	58	106
IPR003340	B3_DNA-bd	185	288

External Links

No external refs found!