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  5. Bra018293

Bra018293 (ATVT-1, HVT1)


Aliases : ATVT-1, HVT1

Description : not classified


Gene families : OG0010512 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra018293
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_266


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000313 organellar ribosome IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004540 RNA nuclease activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005643 nuclear pore IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005761 mitochondrial ribosome IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007088 regulation of mitotic nuclear division IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007346 regulation of mitotic cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010948 negative regulation of cell cycle process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017056 structural constituent of nuclear pore IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017070 U6 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018208 peptidyl-proline modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030623 U5 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031577 spindle checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033046 negative regulation of sister chromatid segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045786 negative regulation of cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045839 negative regulation of mitotic nuclear division IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045930 negative regulation of mitotic cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048519 negative regulation of biological process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048523 negative regulation of cellular process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051783 regulation of nuclear division IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051784 negative regulation of nuclear division IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051983 regulation of chromosome segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051985 negative regulation of chromosome segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071173 spindle assembly checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071174 mitotic spindle checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901988 negative regulation of cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1905818 regulation of chromosome separation IEP Brassica rapa GO terms from Neighborhoods
BP GO:1905819 negative regulation of chromosome separation IEP Brassica rapa GO terms from Neighborhoods
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Brassica rapa GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001650 Helicase_C 609 736
IPR001374 R3H_dom 110 150
IPR007502 Helicase-assoc_dom 801 892
IPR011545 DEAD/DEAH_box_helicase_dom 261 414
IPR011709 DEAD-box_helicase_OB_fold 961 1048
No external refs found!