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Aliases : LSH3, OBO1
Description : plant-specific ALOG-type transcription factor
Gene families : OG0010415 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa (Bra) PCC: Bra018263 | |
| Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_196 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0000786 | nucleosome | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0002097 | tRNA wobble base modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003872 | 6-phosphofructokinase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004332 | fructose-bisphosphate aldolase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0005739 | mitochondrion | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006082 | organic acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006090 | pyruvate metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006096 | glycolytic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006399 | tRNA metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006400 | tRNA modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006801 | superoxide metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008033 | tRNA processing | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008443 | phosphofructokinase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009056 | catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009451 | RNA modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0010498 | proteasomal protein catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016832 | aldehyde-lyase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0022607 | cellular component assembly | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0030163 | protein catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0031145 | anaphase-promoting complex-dependent catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0032993 | protein-DNA complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034227 | tRNA thio-modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034470 | ncRNA processing | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043933 | protein-containing complex organization | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0097602 | cullin family protein binding | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:1901575 | organic substance catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006936 | ALOG_dom | 39 | 162 |
| No external refs found! |