Bra016241 (SNL4)

Aliases : SNL4

Description : component *(SNL) of histone deacetylase machineries

Gene families : OG0007043 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra016241
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_17

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003674	molecular_function	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005048	signal sequence binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005886	plasma membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006468	protein phosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006621	protein retention in ER lumen	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007034	vacuolar transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010921	regulation of phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015693	magnesium ion transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016310	phosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019208	phosphatase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019212	phosphatase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019888	protein phosphatase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022406	membrane docking	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030001	metal ion transport	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032507	maintenance of protein location in cell	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042277	peptide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045185	maintenance of protein location	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046923	ER retention sequence binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048278	vesicle docking	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048583	regulation of response to stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051235	maintenance of location	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051336	regulation of hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051640	organelle localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051651	maintenance of location in cell	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0140029	exocytic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0140056	organelle localization by membrane tethering	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003822	PAH	32	76
IPR003822	PAH	120	163
IPR003822	PAH	315	357
IPR013194	HDAC_interact_dom	435	527
IPR031693	Sin3_C	1012	1250

External Links

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Bra016241 (SNL4)

Expression Profile

Co-expression Networks

Functional Annotation