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  5. Bra014881

Bra014881 (ATCPSF30, OXT6, CPSF30)


Aliases : ATCPSF30, OXT6, CPSF30

Description : component *(CPSF30/Yth1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0002183 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra014881
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_4


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004784 superoxide dismutase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005743 mitochondrial inner membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006066 alcohol metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006801 superoxide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006848 pyruvate transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015711 organic anion transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015718 monocarboxylic acid transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015849 organic acid transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016093 polyprenol metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019348 dolichol metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0019866 organelle inner membrane IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031966 mitochondrial membrane IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046942 carboxylic acid transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072593 reactive oxygen species metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901475 pyruvate transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901615 organic hydroxy compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1903825 organic acid transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:1905039 carboxylic acid transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007275 YTH_domain 269 320
IPR007275 YTH_domain 196 258
No external refs found!