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  5. Bra014652

Bra014652


Description : EC_4.3 carbon-nitrogen lyase


Gene families : OG0004783 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004783_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra014652
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_934

Target Alias Description ECC score Gene Family Method Actions
Bra034344 No alias EC_4.3 carbon-nitrogen lyase 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0016844 strictosidine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Brassica rapa GO terms from Neighborhoods
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004126 cytidine deaminase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006216 cytidine catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006835 dicarboxylic acid transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009116 nucleoside metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009119 ribonucleoside metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009164 nucleoside catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009415 response to water IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009628 response to abiotic stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009972 cytidine deamination IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010035 response to inorganic substance IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015740 C4-dicarboxylate transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015743 malate transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019239 deaminase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042454 ribonucleoside catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044282 small molecule catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046087 cytidine metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140223 general transcription initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901657 glycosyl compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901658 glycosyl compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901700 response to oxygen-containing compound IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902074 response to salt IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR018119 Strictosidine_synth_cons-reg 157 245
No external refs found!