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  5. Bra013142

Bra013142 (SLO2)


Aliases : SLO2

Description : RNA editing factor *(SLO2)


Gene families : OG0027128 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra013142
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_279


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004455 ketol-acid reductoisomerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006164 purine nucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006754 ATP biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009081 branched-chain amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009141 nucleoside triphosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009150 purine ribonucleotide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009165 nucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009259 ribonucleotide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009260 ribonucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016836 hydro-lyase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019693 ribose phosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044281 small molecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046034 ATP metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046390 ribose phosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072522 purine-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098798 mitochondrial protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098800 inner mitochondrial membrane protein complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902600 proton transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 291 314
IPR002885 Pentatricopeptide_rpt 188 211
IPR002885 Pentatricopeptide_rpt 530 553
IPR002885 Pentatricopeptide_rpt 429 454
IPR002885 Pentatricopeptide_rpt 83 111
IPR002885 Pentatricopeptide_rpt 115 144
IPR002885 Pentatricopeptide_rpt 54 81
IPR046848 E_motif 574 637
IPR002885 Pentatricopeptide_rpt 214 262
IPR002885 Pentatricopeptide_rpt 347 395
IPR002885 Pentatricopeptide_rpt 455 502
No external refs found!