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  5. Mp6g05580.1

Mp6g05580.1 (AtMTR4, MTR4)


Aliases : AtMTR4, MTR4

Description : RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex


Gene families : OG0057663 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha (Mpo) PCC: Mp6g05580.1
Cluster Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_154


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0000469 obsolete cleavage involved in rRNA processing IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003678 DNA helicase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004576 oligosaccharyl transferase activity IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005856 cytoskeleton IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005885 Arp2/3 protein complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0007015 actin filament organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0008303 caspase complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0015299 obsolete solute:proton antiporter activity IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0015629 actin cytoskeleton IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0016255 attachment of GPI anchor to protein IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0030515 snoRNA binding IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0030832 regulation of actin filament length IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0030833 regulation of actin filament polymerization IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0032271 regulation of protein polymerization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0032535 regulation of cellular component size IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0032956 regulation of actin cytoskeleton organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0032970 regulation of actin filament-based process IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0034457 Mpp10 complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0042254 ribosome biogenesis IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0042765 GPI-anchor transamidase complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043226 organelle IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043254 regulation of protein-containing complex assembly IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0044087 regulation of cellular component biogenesis IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0045010 actin nucleation IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0051493 regulation of cytoskeleton organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0065008 regulation of biological quality IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0090066 regulation of anatomical structure size IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0097435 supramolecular fiber organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0110053 regulation of actin filament organization IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:1902903 regulation of supramolecular fiber organization IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:1905368 peptidase complex IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:1905369 endopeptidase complex IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Marchantia polymorpha GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012961 Ski2/MTR4_C 834 1003
IPR025696 MTR4_beta-barrel 530 806
IPR011545 DEAD/DEAH_box_helicase_dom 87 233
No external refs found!