Mp5g24460.1 (SSL2, CHR6, CHD3,...)

Aliases : SSL2, CHR6, CHD3, GYM, HRB2, EPP1, LWR1, CKH2, PKL

Description : CHD3-type chromatin remodeling factor *(PKL/PKR)

Gene families : OG0057234 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp5g24460.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_144

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004514	nicotinate-nucleotide diphosphorylase (carboxylating) activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009435	NAD biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016567	protein ubiquitination	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016763	pentosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019674	NAD metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032446	protein modification by small protein conjugation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0070001	aspartic-type peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	77	120
IPR000330	SNF2_N	329	621
IPR009462	CHD_II_SANT-like	973	1101
IPR001650	Helicase_C	649	754
IPR023780	Chromo_domain	222	268
IPR023780	Chromo_domain	127	182
IPR009463	DUF1087	886	924

External Links

No external refs found!

Mp5g24460.1 (SSL2, CHR6, CHD3,...)

Expression Profile

Co-expression Networks

Functional Annotation