Mp4g20590.1 (FIONA, SYCO ARATH)

Aliases : FIONA, SYCO ARATH

Description : EC_6.1 ligase forming carbon-oxygen bond. cysteine-tRNA ligase

Gene families : OG0055181 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp4g20590.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_60

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004817	cysteine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003690	double-stranded DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006790	sulfur compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008199	ferric iron binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0033588	elongator holoenzyme complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0070567	cytidylyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:1901681	sulfur compound binding	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015273	Cys-tRNA-synt_Ia_DALR	459	522
IPR032678	tRNA-synt_1_cat_dom	120	416

External Links

No external refs found!

Mp4g20590.1 (FIONA, SYCO ARATH)

Expression Profile

Co-expression Networks

Functional Annotation