Mp4g14340.1 (NRPB1, RNA_POL_II_LS,...)

Aliases : NRPB1, RNA_POL_II_LS, RPB1, RNA_POL_II_LSRNA_POL_II_LS

Description : component *(NRPB1) of RNA polymerase II complex

Gene families : OG0000964 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000964_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp4g14340.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_20

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra010510	NRPB1,...	component *(NRPB1) of RNA polymerase II complex	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005667	transcription regulator complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005669	transcription factor TFIID complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	713	818
IPR007081	RNA_pol_Rpb1_5	825	1414
IPR000684	RNA_pol_II_repeat_euk	1664	1677
IPR000684	RNA_pol_II_repeat_euk	1594	1607
IPR000684	RNA_pol_II_repeat_euk	1734	1747
IPR000684	RNA_pol_II_repeat_euk	1706	1719
IPR000684	RNA_pol_II_repeat_euk	1650	1663
IPR000684	RNA_pol_II_repeat_euk	1692	1705
IPR000684	RNA_pol_II_repeat_euk	1748	1761
IPR000684	RNA_pol_II_repeat_euk	1755	1768
IPR000684	RNA_pol_II_repeat_euk	1608	1621
IPR000684	RNA_pol_II_repeat_euk	1678	1691
IPR000684	RNA_pol_II_repeat_euk	1622	1635
IPR000684	RNA_pol_II_repeat_euk	1741	1754
IPR000684	RNA_pol_II_repeat_euk	1538	1551
IPR000684	RNA_pol_II_repeat_euk	1552	1565
IPR000684	RNA_pol_II_repeat_euk	1580	1593
IPR000684	RNA_pol_II_repeat_euk	1566	1579
IPR000684	RNA_pol_II_repeat_euk	1636	1649
IPR000684	RNA_pol_II_repeat_euk	1727	1740
IPR007066	RNA_pol_Rpb1_3	524	687
IPR007080	RNA_pol_Rpb1_1	14	350
IPR007075	RNA_pol_Rpb1_6	891	1075
IPR000722	RNA_pol_asu	352	520
IPR007073	RNA_pol_Rpb1_7	1160	1293

External Links

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Mp4g14340.1 (NRPB1, RNA_POL_II_LS,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation