Coexpression cluster: Cluster_20 (Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 15.52% (27/174) 2.04 0.0 0.0
GO:0016070 RNA metabolic process 9.2% (16/174) 2.71 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 11.49% (20/174) 2.13 0.0 3e-06
GO:0005488 binding 35.06% (61/174) 0.93 0.0 3e-06
GO:0090304 nucleic acid metabolic process 9.77% (17/174) 2.32 0.0 4e-06
GO:0006139 nucleobase-containing compound metabolic process 10.34% (18/174) 2.17 0.0 4e-06
GO:0006725 cellular aromatic compound metabolic process 10.92% (19/174) 2.1 0.0 4e-06
GO:0046483 heterocycle metabolic process 10.92% (19/174) 2.1 0.0 4e-06
GO:0006396 RNA processing 5.75% (10/174) 3.17 0.0 5e-06
GO:1901363 heterocyclic compound binding 22.41% (39/174) 1.13 2e-06 4.7e-05
GO:0097159 organic cyclic compound binding 22.41% (39/174) 1.13 2e-06 4.7e-05
GO:0034641 cellular nitrogen compound metabolic process 10.92% (19/174) 1.71 6e-06 0.000129
GO:0006397 mRNA processing 2.3% (4/174) 3.8 0.000184 0.003524
GO:0140640 catalytic activity, acting on a nucleic acid 4.6% (8/174) 2.26 0.000279 0.004961
GO:0016071 mRNA metabolic process 2.3% (4/174) 3.59 0.000326 0.005417
GO:0006807 nitrogen compound metabolic process 14.94% (26/174) 1.03 0.000403 0.006273
GO:0003723 RNA binding 4.02% (7/174) 2.25 0.000703 0.010291
GO:0044237 cellular metabolic process 13.79% (24/174) 1.01 0.000843 0.011052
GO:1901362 organic cyclic compound biosynthetic process 4.02% (7/174) 2.21 0.000839 0.0116
GO:0006364 rRNA processing 1.72% (3/174) 3.8 0.001246 0.01477
GO:0016072 rRNA metabolic process 1.72% (3/174) 3.8 0.001246 0.01477
GO:0034470 ncRNA processing 2.3% (4/174) 3.0 0.00159 0.0165
GO:0005634 nucleus 2.87% (5/174) 2.57 0.001573 0.017029
GO:0006351 DNA-templated transcription 2.3% (4/174) 2.94 0.001812 0.017351
GO:0005515 protein binding 12.64% (22/174) 1.0 0.001544 0.017471
GO:0043170 macromolecule metabolic process 12.64% (22/174) 0.98 0.001797 0.017899
GO:0000398 mRNA splicing, via spliceosome 1.15% (2/174) 4.8 0.002157 0.01852
GO:0000375 RNA splicing, via transesterification reactions 1.15% (2/174) 4.8 0.002157 0.01852
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1.15% (2/174) 4.8 0.002157 0.01852
GO:0019438 aromatic compound biosynthetic process 3.45% (6/174) 2.16 0.002344 0.019455
GO:0005524 ATP binding 8.62% (15/174) 1.18 0.002794 0.021086
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.72% (3/174) 3.43 0.002642 0.021223
GO:0018130 heterocycle biosynthetic process 3.45% (6/174) 2.11 0.00276 0.021479
GO:0036094 small molecule binding 10.92% (19/174) 1.0 0.003023 0.022136
GO:0030554 adenyl nucleotide binding 9.2% (16/174) 1.1 0.00337 0.023975
GO:0034062 5'-3' RNA polymerase activity 1.72% (3/174) 3.26 0.003748 0.025222
GO:0097747 RNA polymerase activity 1.72% (3/174) 3.26 0.003748 0.025222
GO:0000166 nucleotide binding 10.34% (18/174) 1.0 0.004157 0.026538
GO:1901265 nucleoside phosphate binding 10.34% (18/174) 1.0 0.004157 0.026538
GO:0043227 membrane-bounded organelle 2.87% (5/174) 2.19 0.004863 0.028163
GO:0032559 adenyl ribonucleotide binding 8.62% (15/174) 1.1 0.004547 0.028307
GO:0035639 purine ribonucleoside triphosphate binding 9.2% (16/174) 1.05 0.004785 0.028371
GO:0043231 intracellular membrane-bounded organelle 2.87% (5/174) 2.21 0.004697 0.028528
GO:0017076 purine nucleotide binding 9.77% (17/174) 0.99 0.005537 0.031334
GO:0008380 RNA splicing 1.15% (2/174) 4.1 0.005834 0.03158
GO:0140098 catalytic activity, acting on RNA 2.87% (5/174) 2.14 0.005756 0.031852
GO:0004526 ribonuclease P activity 0.57% (1/174) 6.8 0.008959 0.033801
GO:0050897 cobalt ion binding 0.57% (1/174) 6.8 0.008959 0.033801
GO:0017069 snRNA binding 0.57% (1/174) 6.8 0.008959 0.033801
GO:0017070 U6 snRNA binding 0.57% (1/174) 6.8 0.008959 0.033801
GO:0030623 U5 snRNA binding 0.57% (1/174) 6.8 0.008959 0.033801
GO:0051202 phytochromobilin metabolic process 0.57% (1/174) 6.8 0.008959 0.033801
GO:0034457 Mpp10 complex 0.57% (1/174) 6.8 0.008959 0.033801
GO:0000350 generation of catalytic spliceosome for second transesterification step 0.57% (1/174) 6.8 0.008959 0.033801
GO:0004399 histidinol dehydrogenase activity 0.57% (1/174) 6.8 0.008959 0.033801
GO:0004637 phosphoribosylamine-glycine ligase activity 0.57% (1/174) 6.8 0.008959 0.033801
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 0.57% (1/174) 6.8 0.008959 0.033801
GO:0009113 purine nucleobase biosynthetic process 0.57% (1/174) 6.8 0.008959 0.033801
GO:0006144 purine nucleobase metabolic process 0.57% (1/174) 6.8 0.008959 0.033801
GO:0010024 phytochromobilin biosynthetic process 0.57% (1/174) 6.8 0.008959 0.033801
GO:0097367 carbohydrate derivative binding 9.2% (16/174) 0.94 0.009434 0.034546
GO:0043168 anion binding 9.77% (17/174) 0.91 0.009609 0.034677
GO:0034660 ncRNA metabolic process 2.3% (4/174) 2.26 0.009795 0.034844
GO:0043167 ion binding 13.79% (24/174) 0.73 0.009417 0.034996
GO:0032774 RNA biosynthetic process 2.3% (4/174) 2.41 0.006886 0.036481
GO:0032555 purine ribonucleotide binding 9.2% (16/174) 0.98 0.007296 0.03785
GO:0032553 ribonucleotide binding 9.2% (16/174) 0.97 0.007987 0.040587
GO:0044238 primary metabolic process 14.94% (26/174) 0.71 0.008411 0.041064
GO:0003674 molecular_function 40.8% (71/174) 0.35 0.008381 0.041738
GO:0071704 organic substance metabolic process 15.52% (27/174) 0.69 0.008779 0.042036
GO:0016853 isomerase activity 2.3% (4/174) 2.16 0.012539 0.043976
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity 0.57% (1/174) 5.8 0.017839 0.049909
GO:0097354 prenylation 0.57% (1/174) 5.8 0.017839 0.049909
GO:0046112 nucleobase biosynthetic process 0.57% (1/174) 5.8 0.017839 0.049909
GO:0030515 snoRNA binding 0.57% (1/174) 5.8 0.017839 0.049909
GO:0018342 protein prenylation 0.57% (1/174) 5.8 0.017839 0.049909
GO:0016743 carboxyl- or carbamoyltransferase activity 0.57% (1/174) 5.8 0.017839 0.049909
GO:0016597 amino acid binding 0.57% (1/174) 5.8 0.017839 0.049909
GO:0008318 protein prenyltransferase activity 0.57% (1/174) 5.8 0.017839 0.049909
GO:0030490 maturation of SSU-rRNA 0.57% (1/174) 5.8 0.017839 0.049909
GO:0004549 tRNA-specific ribonuclease activity 0.57% (1/174) 5.8 0.017839 0.049909
GO:0004659 prenyltransferase activity 0.57% (1/174) 5.8 0.017839 0.049909
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.57% (1/174) 5.8 0.017839 0.049909
GO:0015020 glucuronosyltransferase activity 0.57% (1/174) 5.8 0.017839 0.049909
GO:0009112 nucleobase metabolic process 0.57% (1/174) 5.8 0.017839 0.049909
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_111 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (174) (download table)

InterPro Domains

GO Terms

Family Terms