Mp3g20900.1

Description : tRNA dihydrouridine synthase

Gene families : OG0053293 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp3g20900.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_158

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	None	Extended
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	None	Extended
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	IEA	Interproscan
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0106413	RNA dihydrouridine synthase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004402	histone acetyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006475	internal protein amino acid acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016197	endosomal transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016482	cytosolic transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016573	histone acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0019905	syntaxin binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030286	dynein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030906	retromer, cargo-selective complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0070568	guanylyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140993	histone modifying activity	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001269	DUS_fam	370	635

External Links

No external refs found!

Mp3g20900.1

Expression Profile

Co-expression Networks

Functional Annotation