Mp3g13780.1

Description : SSU processome assembly factor *(UTP21)

Gene families : OG0052727 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp3g13780.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_20

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031124	mRNA 3'-end processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0034457	Mpp10 complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR024977	Apc4-like_WD40_dom	192	278
IPR007319	SSU_processome_Utp21	691	915
IPR001680	WD40_rpt	551	587
IPR001680	WD40_rpt	474	504

External Links

No external refs found!

Mp3g13780.1

Expression Profile

Co-expression Networks

Functional Annotation