Mp3g09020.1 (RAP74, ATRAP74)

Aliases : RAP74, ATRAP74

Description : subunit alpha of TFIIf basal transcription factor complex

Gene families : OG0052402 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp3g09020.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_124

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0032784	regulation of DNA-templated transcription elongation	None	Extended
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	None	Extended
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEA	Interproscan
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004559	alpha-mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005509	calcium ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005783	endoplasmic reticulum	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005856	cytoskeleton	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005885	Arp2/3 protein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0007015	actin filament organization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008236	serine-type peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0015629	actin cytoskeleton	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015923	mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017171	serine hydrolase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030623	U5 snRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0030832	regulation of actin filament length	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0030833	regulation of actin filament polymerization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032271	regulation of protein polymerization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032535	regulation of cellular component size	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032970	regulation of actin filament-based process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0033043	regulation of organelle organization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045010	actin nucleation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0065008	regulation of biological quality	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0090066	regulation of anatomical structure size	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0097435	supramolecular fiber organization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0110053	regulation of actin filament organization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR008851	TFIIF-alpha	49	549

External Links

No external refs found!

Mp3g09020.1 (RAP74, ATRAP74)

Expression Profile

Co-expression Networks

Functional Annotation