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Mp3g00520.1


Description : component *(uS4) of small ribosomal-subunit (SSU) proteome


Gene families : OG0002087 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha (Mpo) PCC: Mp3g00520.1
Cluster Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Bra006289 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra008713 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0000445 THO complex part of transcription export complex IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003735 structural constituent of ribosome IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003746 translation elongation factor activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004197 cysteine-type endopeptidase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005875 microtubule associated complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006412 translation IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016409 palmitoyltransferase activity IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0016485 protein processing IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0030286 dynein complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043226 organelle IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043603 amide metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0051604 protein maturation IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0071586 CAAX-box protein processing IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001912 Ribosomal_uS4_N 12 64
IPR002942 S4_RNA-bd 109 152
No external refs found!