Mp1g21810.1 (VIP4)

Aliases : VIP4

Description : component *(VIP4/LEO1) of PAF1C transcription initiation and elongation complex

Gene families : OG0048914 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp1g21810.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_78

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	None	Extended
BP	GO:0006368	transcription elongation by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
CC	GO:0008023	transcription elongation factor complex	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016570	histone modification	IEA	Interproscan
CC	GO:0016593	Cdc73/Paf1 complex	IEA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003674	molecular_function	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003909	DNA ligase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005216	monoatomic ion channel activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005261	monoatomic cation channel activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005262	calcium channel activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006816	calcium ion transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006950	response to stress	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006974	DNA damage response	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015267	channel activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0019905	syntaxin binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0030001	metal ion transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030286	dynein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030983	mismatched DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043138	3'-5' DNA helicase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0050896	response to stimulus	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051716	cellular response to stimulus	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0070588	calcium ion transmembrane transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0097553	calcium ion transmembrane import into cytosol	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0098657	import into cell	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0098659	inorganic cation import across plasma membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0098703	calcium ion import across plasma membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0098739	import across plasma membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0099587	inorganic ion import across plasma membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0106413	RNA dihydrouridine synthase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:1901702	salt transmembrane transporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007149	Leo1	268	425

External Links

No external refs found!

Mp1g21810.1 (VIP4)

Expression Profile

Co-expression Networks

Functional Annotation