Mp1g17990.1 (LIG4, ATLIG4)

Aliases : LIG4, ATLIG4

Description : EC_6.5 ligase forming phosphoric ester bond. DNA ligase component *(LIG4) of LIG4-XRCC4 ligase complex

Gene families : OG0048580 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp1g17990.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_5

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004559	alpha-mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005048	signal sequence binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006621	protein retention in ER lumen	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015923	mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016197	endosomal transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016482	cytosolic transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016763	pentosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0018024	obsolete histone lysine N-methyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030286	dynein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030906	retromer, cargo-selective complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032507	maintenance of protein location in cell	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0033218	amide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0042277	peptide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045185	maintenance of protein location	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0046923	ER retention sequence binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051235	maintenance of location	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051651	maintenance of location in cell	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012308	DNA_ligase_ATP-dep_N	8	187
IPR001357	BRCT_dom	639	722
IPR012310	DNA_ligase_ATP-dep_cent	227	425
IPR012309	DNA_ligase_ATP-dep_C	449	571

External Links

No external refs found!

Mp1g17990.1 (LIG4, ATLIG4)

Expression Profile

Co-expression Networks

Functional Annotation