Bra011638 (NRPB1, RNA_POL_II_LS,...)

Aliases : NRPB1, RNA_POL_II_LS, RPB1, RNA_POL_II_LSRNA_POL_II_LS

Description : phospholipase-D *(PLD-delta). EC_3.1 hydrolase acting on ester bond. component *(NRPB1) of RNA polymerase II complex

Gene families : OG0000964 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000964_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra011638
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_114

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	IEA	Interproscan
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015740	C4-dicarboxylate transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015743	malate transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	686	789
IPR000008	C2_dom	1871	2011
IPR000722	RNA_pol_asu	323	491
IPR025202	PLD-like_dom	2414	2590
IPR007081	RNA_pol_Rpb1_5	796	1386
IPR007075	RNA_pol_Rpb1_6	862	1046
IPR024632	PLipase_D_C	2629	2698
IPR007066	RNA_pol_Rpb1_3	495	658
IPR007080	RNA_pol_Rpb1_1	1	321
IPR007073	RNA_pol_Rpb1_7	1131	1265
IPR001736	PLipase_D/transphosphatidylase	2210	2244

External Links

No external refs found!

Bra011638 (NRPB1, RNA_POL_II_LS,...)

Expression Profile

Co-expression Networks

Functional Annotation