Spov3_chr6.02627

Description : not classified

Gene families : OG0065709 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr6.02627
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_15

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004797	thymidine kinase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019136	deoxynucleoside kinase activity	None	Extended
MF	GO:0019205	nucleobase-containing compound kinase activity	None	Extended
MF	GO:0019206	nucleoside kinase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003690	double-stranded DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003883	CTP synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004826	phenylalanine-tRNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006432	phenylalanyl-tRNA aminoacylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006950	response to stress	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006974	DNA damage response	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008150	biological_process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0018024	obsolete histone lysine N-methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030983	mismatched DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048478	obsolete replication fork protection	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050896	response to stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051716	cellular response to stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_rpt	195	218
IPR002885	Pentatricopeptide_rpt	220	266
IPR002885	Pentatricopeptide_rpt	319	367
IPR001267	Thymidine_kinase	83	106
IPR046848	E_motif	437	499

External Links

No external refs found!

Spov3_chr6.02627

Expression Profile

Co-expression Networks

Functional Annotation