Spov3_chr6.02064 (ARF16)

Aliases : ARF16

Description : ARF-type transcription factor

Gene families : OG0019364 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr6.02064
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_30

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004525	ribonuclease III activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004652	obsolete polynucleotide adenylyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004673	protein histidine kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005096	GTPase activator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005216	monoatomic ion channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005253	monoatomic anion channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005254	chloride channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005667	transcription regulator complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005669	transcription factor TFIID complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008047	enzyme activator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015267	channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016151	nickel cation binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019627	urea metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0035550	urease complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0040008	regulation of growth	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043419	urea catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043605	amide catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043631	obsolete RNA polyadenylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045927	positive regulation of growth	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071941	nitrogen cycle metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140299	small molecule sensor activity	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	289	370
IPR003340	B3_DNA-bd	120	221

External Links

No external refs found!

Spov3_chr6.02064 (ARF16)

Expression Profile

Co-expression Networks

Functional Annotation