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  5. Spov3_chr6.00407

Spov3_chr6.00407 (RPL5B, OLI7)


Aliases : RPL5B, OLI7

Description : component *(uL18) of large ribosomal-subunit (LSU) proteome


Gene families : OG0001607 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001607_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr6.00407
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Bra013215 RPL5A, ATL5, PGY3, OLI5 component *(uL18) of large ribosomal-subunit (LSU) proteome 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra015131 No alias component *(uL18) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0008097 5S rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003746 translation elongation factor activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006082 organic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006520 amino acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016597 amino acid binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019752 carboxylic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0031406 carboxylic acid binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032392 DNA geometric change IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032508 DNA duplex unwinding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043177 organic acid binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043436 oxoacid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005485 Rbsml_uL18_euk/arc 38 199
IPR025607 Ribosomal_uL18_C_euk 259 312
No external refs found!