Spov3_chr5.03987 (ATGTF2H2, GTF2H2)

Aliases : ATGTF2H2, GTF2H2

Description : component *(SSL1) of TFIIh basal transcription factor complex. component *(SSL1) of multifunctional TFIIh complex

Gene families : OG0001414 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001414_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr5.03987
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_54

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008037	cell recognition	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0033588	elongator holoenzyme complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048544	recognition of pollen	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007198	Ssl1-like	142	332
IPR004595	TFIIH_C1-like_dom	415	463

External Links

No external refs found!

Spov3_chr5.03987 (ATGTF2H2, GTF2H2)

Expression Profile

Co-expression Networks

Functional Annotation