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  5. Spov3_chr5.02759

Spov3_chr5.02759 (RPP4, CHS2)


Aliases : RPP4, CHS2

Description : not classified


Gene families : OG0000269 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000269_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr5.02759
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0006.00089 DELTA-VPE, DELTAVPE, AEP4 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0006.00090 NSUN5, AtTRM4h, TRM4h not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01877 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03013 POL2B, TIL2 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03108 DELTA-VPE, DELTAVPE, AEP4 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.02599 PDE120, TIC40, ATTIC40 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03056 AAE17 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 24 39
IPR025724 GAG-pre-integrase_dom 440 478
No external refs found!