Spov3_chr5.02660 (RPA1A, RPA70A,...)

Aliases : RPA1A, RPA70A, ATRPA70A, ATRPA1A

Description : component *(RPA1) of RPA presynaptic filament assembly factor complex. component *(RPA1) of single-stranded-DNA binding RPA complex

Gene families : OG0072269 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr5.02660
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_160

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016556	mRNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043484	regulation of RNA splicing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050684	regulation of mRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0080009	mRNA methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007199	Rep_factor-A_N	5	98
IPR013955	Rep_factor-A_C	463	614
IPR031657	REPA_OB_2	301	405
IPR004365	NA-bd_OB_tRNA	192	273

External Links

No external refs found!