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  5. Spov3_chr5.01730

Spov3_chr5.01730 (ORTH4, VIM4)


Aliases : ORTH4, VIM4

Description : FRS/FRF-type transcription factor


Gene families : OG0000034 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000034_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr5.01730
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0002.00012 GSDA FRS/FRF-type transcription factor 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0005.00031 ORTH4, VIM4 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0034.00015 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0038.00005 PAP25, ATPAP25 FRS/FRF-type transcription factor 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0038.00006 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0054.00019 HCF208, CCB2 not classified 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.00328 ORTH4, VIM4 FRS/FRF-type transcription factor 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01738 SCRM, ICE1,... FRS/FRF-type transcription factor 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01844 SDG40 FRS/FRF-type transcription factor 0.15 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01845 GSDA FRS/FRF-type transcription factor 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02997 No alias FRS/FRF-type transcription factor 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03937 PAP25, ATPAP25 FRS/FRF-type transcription factor 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.00596 ORTH4, VIM4 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01880 SDG40 FRS/FRF-type transcription factor 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01881 PAP25, ATPAP25 FRS/FRF-type transcription factor 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01111 ORTH4, VIM4 FRS/FRF-type transcription factor 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01114 PAP25, ATPAP25 FRS/FRF-type transcription factor 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01535 GSDA FRS/FRF-type transcription factor 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01536 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03722 No alias FRS/FRF-type transcription factor 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.04069 PAP25, ATPAP25 FRS/FRF-type transcription factor 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.05005 No alias FRS/FRF-type transcription factor 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00982 PAP25, ATPAP25 FRS/FRF-type transcription factor 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.04226 ORTH4, VIM4 FRS/FRF-type transcription factor 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.00289 ORTH4, VIM4 FRS/FRF-type transcription factor 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.00463 ORTH4, VIM4 FRS/FRF-type transcription factor 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03253 PAP25, ATPAP25 FRS/FRF-type transcription factor 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01256 GSDA FRS/FRF-type transcription factor 0.14 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01959 PAP25, ATPAP25 FRS/FRF-type transcription factor 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02685 PAP25, ATPAP25 FRS/FRF-type transcription factor 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02686 No alias FRS/FRF-type transcription factor 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008234 cysteine-type peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015930 glutamate synthase activity IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004330 FAR1_DNA_bnd_dom 57 145
No external refs found!