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Aliases : LDL3
Description : histone demethylase *(KDM1d)
Gene families : OG0002430 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002430_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_chr5.01548 | |
| Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_162 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| MF | GO:0016491 | oxidoreductase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0000166 | nucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0000176 | nuclear exosome (RNase complex) | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0000178 | exosome (RNase complex) | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003677 | DNA binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003712 | transcription coregulator activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003729 | mRNA binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004527 | exonuclease activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0005524 | ATP binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005575 | cellular_component | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005634 | nucleus | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005685 | U1 snRNP | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006325 | chromatin organization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006338 | chromatin remodeling | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006376 | mRNA splice site recognition | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006508 | proteolysis | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0008150 | biological_process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009056 | catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0016043 | cellular component organization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0016592 | mediator complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0017076 | purine nucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0018024 | obsolete histone lysine N-methyltransferase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0022618 | protein-RNA complex assembly | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0031491 | nucleosome binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0032553 | ribonucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0034450 | ubiquitin-ubiquitin ligase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0036094 | small molecule binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0043167 | ion binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0043168 | anion binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0043687 | post-translational protein modification | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0043933 | protein-containing complex organization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0071824 | protein-DNA complex organization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0071826 | protein-RNA complex organization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0098797 | plasma membrane protein complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140359 | ABC-type transporter activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140657 | ATP-dependent activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1901575 | organic substance catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:1902494 | catalytic complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:1905354 | exoribonuclease complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:1990234 | transferase complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| No external refs found! |