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  5. Spov3_chr5.01393

Spov3_chr5.01393 (PFA4, AtbHLH112)


Aliases : PFA4, AtbHLH112

Description : not classified


Gene families : OG0000453 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000453_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr5.01393
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr1.03039 PFA4, AtbHLH112 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03056 CTL16 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00965 CDC45 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01394 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005048 signal sequence binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006621 protein retention in ER lumen IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015074 DNA integration IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032507 maintenance of protein location in cell IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0033218 amide binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0042277 peptide binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045185 maintenance of protein location IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0046923 ER retention sequence binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051235 maintenance of location IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051651 maintenance of location in cell IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0072595 maintenance of protein localization in organelle IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004332 Transposase_MuDR 377 427
No external refs found!