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  5. Bra000108

Bra000108


Description : histone demethylase *(PKDM7)


Gene families : OG0010691 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra000108
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_96


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0097526 spliceosomal tri-snRNP complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003347 JmjC_dom 376 491
IPR003349 JmjN 161 194
IPR004198 Znf_C5HC2 598 648
No external refs found!