Spov3_chr5.01078 (AGL20, SOC1, ATSOC1)

Aliases : AGL20, SOC1, ATSOC1

Description : MADS/AGL-type transcription factor

Gene families : OG0072154 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr5.01078
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_101

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004497	monooxygenase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005506	iron ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006766	vitamin metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006771	riboflavin metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008531	riboflavin kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009110	vitamin biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009231	riboflavin biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0017004	cytochrome complex assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0020037	heme binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032954	regulation of cytokinetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032955	regulation of division septum assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046906	tetrapyrrole binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051301	cell division	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901891	regulation of cell septum assembly	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	85	172
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Spov3_chr5.01078 (AGL20, SOC1, ATSOC1)

Expression Profile

Co-expression Networks

Functional Annotation