Spov3_chr5.00870

Description : component *(NRPE4) of RNA polymerase V complex. component *(NRPD4) of RNA polymerase IV complex

Gene families : OG0071458 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr5.00870
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_109

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	IEA	Interproscan
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005574	Rpb4/RPC9	117	190

External Links

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Spov3_chr5.00870

Expression Profile

Co-expression Networks

Functional Annotation