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  5. Spov3_chr4.03885

Spov3_chr4.03885


Description : not classified


Gene families : OG0000138 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr4.03885
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0004.00023 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03454 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03874 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03841 OCP3 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.04405 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.02353 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01822 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01823 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01894 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03934 UPL5 not classified 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03935 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.00964 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01458 No alias not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02137 No alias not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006275 regulation of DNA replication IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006528 asparagine metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006529 asparagine biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008134 transcription factor binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009066 aspartate family amino acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017025 TBP-class protein binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051052 regulation of DNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140296 general transcription initiation factor binding IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 722 825
No external refs found!