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  5. Spov3_chr4.02016

Spov3_chr4.02016 (AHL13)


Aliases : AHL13

Description : not classified


Gene families : OG0000048 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr4.02016

Target Alias Description ECC score Gene Family Method Actions
Spov3_S10.00049 MCM6 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S10.00050 TRFL4 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03408 FBL6, EBF1 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03490 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02815 AtTKL1, TKL1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01607 UPL2 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02856 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005787 signal peptidase complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006465 signal peptide processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016485 protein processing IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043603 amide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051604 protein maturation IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1905368 peptidase complex IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 747 773
IPR018289 MULE_transposase_dom 495 588
No external refs found!