Spov3_chr4.01049 (SYNC3)

Aliases : SYNC3

Description : EC_6.1 ligase forming carbon-oxygen bond. asparagine-tRNA ligase

Gene families : OG0019508 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr4.01049
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_158

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006417	regulation of translation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006448	regulation of translational elongation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006449	regulation of translational termination	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008612	peptidyl-lysine modification to peptidyl-hypusine	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010628	positive regulation of gene expression	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015078	proton transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016791	phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034248	regulation of amide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034250	positive regulation of amide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043022	ribosome binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045901	positive regulation of translational elongation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045905	positive regulation of translational termination	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051130	positive regulation of cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1902600	proton transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004364	Aa-tRNA-synt_II	154	219
IPR004364	Aa-tRNA-synt_II	304	565
IPR004365	NA-bd_OB_tRNA	57	133

External Links

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Spov3_chr4.01049 (SYNC3)

Expression Profile

Co-expression Networks

Functional Annotation