Spov3_chr4.00446 (NDC1)

Aliases : NDC1

Description : not classified

Gene families : OG0000275 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000275_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr4.00446
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_103

Target	Alias	Description	ECC score	Gene Family Method
Spov3_C0047.00022	HCC2	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03224	atg16	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00445	atg16	not classified	0.08	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006528	asparagine metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006529	asparagine biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008037	cell recognition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008652	amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048544	recognition of pollen	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0050661	NADP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR026960	RVT-Znf	1004	1094
IPR002156	RNaseH_domain	1202	1323

External Links

No external refs found!

Spov3_chr4.00446 (NDC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation