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  5. Spov3_chr4.00058

Spov3_chr4.00058 (IRR)


Aliases : IRR

Description : component *(CWC21) of MAC spliceosome-associated complex


Gene families : OG0017724 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr4.00058
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_1_73301.1 IRR component *(CWC21) of MAC spliceosome-associated complex 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0000786 nucleosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003909 DNA ligase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003910 DNA ligase (ATP) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004560 alpha-L-fucosidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006310 DNA recombination IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006835 dicarboxylic acid transport IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008408 3'-5' exonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015711 organic anion transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015740 C4-dicarboxylate transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015743 malate transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015849 organic acid transport IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015928 fucosidase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016307 obsolete phosphatidylinositol phosphate kinase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043531 ADP binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046942 carboxylic acid transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:2001070 starch binding IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 340 400
IPR017868 Filamin/ABP280_repeat-like 71 169
No external refs found!