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  5. Spov3_chr3.04718

Spov3_chr3.04718


Description : not classified


Gene families : OG0067225 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr3.04718
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_156


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0000176 nuclear exosome (RNase complex) IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0000178 exosome (RNase complex) IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006354 DNA-templated transcription elongation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006368 transcription elongation by RNA polymerase II IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006376 mRNA splice site recognition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006606 protein import into nucleus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006887 exocytosis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008408 3'-5' exonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010498 proteasomal protein catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016570 histone modification IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0016593 Cdc73/Paf1 complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019941 modification-dependent protein catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0022618 protein-RNA complex assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032940 secretion by cell IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033365 protein localization to organelle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034504 protein localization to nucleus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046903 secretion IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051170 import into nucleus IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0061608 nuclear import signal receptor activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071826 protein-RNA complex organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0072594 establishment of protein localization to organelle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0099023 vesicle tethering complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140142 nucleocytoplasmic carrier activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0140352 export from cell IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901565 organonitrogen compound catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1905354 exoribonuclease complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001650 Helicase_C 383 490
IPR011545 DEAD/DEAH_box_helicase_dom 168 347
No external refs found!