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Heatmap: Cluster_261 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
-0.56 -0.13 -0.45 -0.66 0.31 0.32 -0.47 0.08 -0.45 -0.6 -0.8 -1.04 -0.23 0.52 0.81 -0.28 0.08 0.09 -0.37 -0.24 -0.39 -0.39 2.37 0.04 -0.28 -0.97 -0.5 -0.42 -0.57 -0.36 -0.43
Bra001490 (MRP3)
 0.5 0.38 1.06 -0.41 1.34 1.11 -1.53 -1.5 -0.77 -0.17 -0.51 -0.06 -0.51 0.46 0.63 -0.13 -0.27 0.34 0.11 -0.0 -0.58 -0.01 2.29 -2.59 -2.61 -2.52 -3.05 -2.36 -2.36 -1.62 -1.68
Bra002023 (IDH2)
 -0.26 0.14 -0.19 -0.52 0.77 0.48 -0.49 -0.64 -0.38 0.07 -0.37 -0.16 -0.07 0.38 0.34 0.19 -0.0 0.24 -0.4 -0.49 -0.44 -0.1 1.8 -0.33 -0.44 -0.4 -0.55 -0.34 -0.43 -0.11 -0.59
Bra002498 (LecRK-I.8)
 -1.83 1.01 0.13 -0.71 1.38 0.98 -2.56 -2.3 -1.8 0.23 -1.5 -0.07 -1.94 -0.76 -0.18 0.02 -0.6 -0.41 -1.44 -1.0 -1.98 0.93 3.12 -0.49 -2.1 -2.13 -1.35 -1.14 -1.08 -0.43 -2.95
Bra003083 (ATL96)
 0.07 0.74 -0.06 -0.8 1.38 0.2 -1.74 -5.76 -1.15 0.25 -0.78 -0.56 -4.16 -0.84 0.59 -0.79 -0.5 -1.91 -1.03 -4.61 -2.26 0.56 3.31 -1.73 -0.75 -2.83 -0.92 -0.18 -0.34 -0.51 -5.52
Bra003402 (MRP9)
 -0.61 -0.41 -0.96 -1.2 0.6 1.09 -0.4 -1.32 -0.38 -0.25 -0.41 -0.2 -0.51 0.83 0.87 0.06 -0.14 -0.34 -0.23 -0.77 -0.5 0.36 1.75 -0.23 -0.26 -0.48 -0.36 0.13 0.13 -0.4 -0.63
Bra003448 (PUB36)
 -2.72 0.82 -0.26 -0.18 0.66 1.85 -1.44 -3.79 -1.48 -0.02 -3.29 -0.61 -2.77 -4.12 0.08 -0.26 -0.51 1.12 -0.78 -2.19 -1.87 1.02 3.44 -3.61 -4.08 -5.98 -1.86 -4.92 -3.98 -2.84 -7.2
Bra004272 (HSFA8)
 0.39 0.59 0.6 -0.54 0.79 0.61 -0.6 -0.76 0.02 -0.92 -0.53 -0.29 -1.61 0.29 0.7 0.06 -0.16 -0.6 -0.11 -0.35 -0.31 -0.27 1.65 -0.54 -0.54 -0.77 -0.46 -0.11 -0.14 0.07 -0.77
-1.65 -0.27 0.24 -1.41 0.9 1.38 -1.01 -2.45 -0.28 -0.28 -1.69 -0.5 -1.84 0.21 1.0 -0.07 0.36 0.22 -0.65 -1.35 -0.76 -0.39 2.1 -0.39 -0.6 -0.73 -0.01 -0.62 0.03 0.8 -0.88
Bra008347 (UNE2)
 -0.35 0.4 0.38 -1.08 0.4 0.44 -1.13 -1.79 -0.42 -0.36 -0.66 -0.57 -0.93 0.91 1.0 -0.14 0.05 0.28 -0.33 -0.46 -0.71 -0.26 2.55 -0.73 -0.89 -1.47 -0.86 -0.67 -0.72 -0.74 -0.7
Bra010102 (GALT6)
 -0.47 0.33 -0.36 -0.78 1.07 1.03 -0.63 -1.16 -0.56 -0.44 -0.8 -0.32 -0.98 0.5 0.84 0.26 -0.25 -0.27 -0.54 -0.6 -0.91 -0.32 2.19 -0.51 -0.58 -0.19 -0.68 -0.2 -0.09 -0.53 -1.12
0.15 0.22 0.25 -0.14 1.0 0.41 -0.91 -0.91 -0.14 -0.0 -0.29 0.04 -0.67 0.98 0.96 0.13 0.0 -0.1 -0.32 -0.65 -0.63 -0.24 1.86 -1.34 -1.33 -0.72 -1.2 -0.75 -0.45 -0.57 -1.03
Bra013390 (MWL-2)
 -0.91 1.09 0.75 -0.92 0.97 1.46 -2.45 - -0.66 -0.19 -1.24 -1.15 -0.86 0.96 0.68 -1.28 -3.44 -0.94 -0.59 -0.95 -0.93 -0.9 2.94 -0.79 -0.8 -0.76 -1.33 -1.64 -1.99 -1.03 -0.77
Bra013445 (VSR7)
 -0.99 0.73 -0.28 -1.64 0.95 1.25 -1.52 -3.07 -0.13 0.01 -0.92 -0.05 -2.45 0.15 1.17 -0.39 -0.41 0.33 -0.5 -1.44 -1.16 0.44 2.74 -0.89 -1.51 -2.35 -1.36 -0.89 -0.71 -0.25 -2.61
-0.54 -1.09 -0.61 -0.47 0.6 0.34 -1.42 -0.09 -0.31 -0.15 -0.82 -0.34 -0.72 0.65 1.36 -0.52 -0.06 -0.15 -0.34 -0.32 -0.23 -0.18 2.05 -0.24 -0.26 -0.45 -0.39 -0.21 -0.15 -0.41 -0.27
-0.53 0.09 0.12 -0.43 0.52 0.64 -0.47 -0.77 -0.37 0.06 -0.3 0.11 -1.52 0.3 0.68 -0.18 0.04 -0.25 -0.19 -0.18 -0.39 0.36 1.79 -0.59 -0.65 0.11 -0.48 -0.34 -0.17 -0.16 -0.93
Bra017502 (BI1)
 -0.18 0.15 -0.04 -0.3 0.54 0.49 -0.95 -0.74 -0.19 -0.13 -0.41 -0.16 -0.55 0.26 0.75 -0.02 -0.1 0.48 -0.42 -0.67 -0.69 -0.02 2.17 -0.79 -0.92 -0.76 -0.69 -0.56 -0.52 0.02 -0.41
-0.19 -0.38 0.51 -0.24 0.55 0.4 -0.49 -0.32 -0.23 -0.15 -0.34 -0.25 -0.21 0.45 0.35 0.06 -0.21 0.48 -0.26 0.07 -0.55 0.07 1.18 -0.38 -0.22 -0.57 -0.3 -0.33 -0.05 -0.1 -0.15
Bra019317 (CRK11)
 -1.51 0.08 -0.45 -2.51 -1.88 1.79 -3.1 - - -1.43 - -1.94 -0.19 - -0.23 -0.69 -0.18 1.98 -2.8 - -1.91 0.36 3.62 0.35 - -0.58 - -0.35 - -1.75 -
-0.2 -0.21 0.43 -0.5 0.82 -0.04 -2.04 -0.98 -0.72 -0.74 -0.98 -1.09 -0.8 1.0 1.05 -0.77 -1.66 1.11 -0.19 -0.96 -1.61 -0.51 2.67 -1.02 -1.05 -1.53 -1.2 -0.55 -0.25 0.18 -0.68
Bra022870 (EVR)
 -0.67 0.47 0.29 -1.07 0.97 1.14 -1.14 -2.05 -0.17 0.01 -0.55 -0.08 -2.09 0.24 1.05 -0.09 -0.01 -0.88 -0.91 -1.13 -1.03 0.11 2.33 -0.81 -1.12 -0.36 -0.92 -0.62 -0.1 0.2 -1.77
Bra023845 (POP2)
 -0.44 -0.02 0.19 -0.42 0.83 0.29 -1.66 -1.6 -0.07 -0.47 -0.37 -0.62 -1.05 0.89 0.88 -0.75 -0.78 -0.2 0.02 -0.64 -0.81 -0.48 2.56 -0.63 -0.72 -0.87 -0.96 -0.09 -0.06 -0.45 -0.65
Bra024638 (AT3-MMP)
 -0.84 0.4 0.63 -0.17 0.94 0.48 -2.07 -1.87 -0.07 -0.75 -0.84 0.05 -3.74 0.01 0.18 -1.36 -0.89 0.21 -0.44 -0.92 -1.42 -0.24 2.22 -0.85 -1.17 -0.06 -0.74 0.47 0.51 1.37 -1.57
-0.34 -0.18 0.27 -1.19 0.49 0.16 -1.65 -1.8 -0.08 -0.6 -0.51 -0.18 -0.86 0.75 0.39 -0.56 -1.02 0.51 0.04 -0.28 -0.6 -0.53 2.47 -0.53 -0.59 0.24 -0.5 -0.49 -0.25 -0.16 -0.39
-0.3 0.23 0.83 -0.22 0.48 0.07 -1.26 -1.49 0.12 -0.13 -0.39 -0.83 -0.45 0.67 0.36 -0.46 -0.63 0.15 0.0 -0.38 -0.14 -0.17 2.41 -0.73 -1.0 -1.01 -0.84 -0.47 -0.71 -0.64 -0.45
-0.29 0.51 0.62 -0.6 0.75 0.99 -1.18 -2.43 -0.42 -0.81 -1.26 -0.81 -2.2 0.92 0.52 -0.76 -1.29 -0.16 -0.22 -1.12 -0.74 -0.38 2.78 -0.71 -0.68 -1.57 -0.79 -0.26 -0.15 -0.26 -2.14
Bra031153 (pEARLI4)
 -1.38 0.75 1.1 0.68 0.54 1.04 -1.02 -2.09 -1.75 -1.38 -1.36 -1.3 -2.22 0.36 0.89 -1.95 -1.03 0.57 -1.05 -1.81 -0.81 -1.11 3.12 -2.03 -1.11 -1.2 -1.62 -0.78 -0.19 -1.31 -4.08
Bra031452 (FRG4)
 -0.01 0.22 0.27 -0.03 0.58 0.68 -0.63 -0.75 -0.26 -0.28 -0.49 -0.45 -0.7 0.55 0.43 -0.07 -0.29 0.07 -0.18 -0.2 -0.29 -0.3 1.82 -0.54 -0.5 -0.28 -0.58 -0.3 -0.17 -0.35 -0.57
Bra033431 (PAD4)
 -1.15 0.09 0.14 -1.73 0.78 0.7 -1.45 -2.63 -0.93 -0.67 -0.79 -0.75 -0.49 0.82 0.94 -0.01 -0.43 0.12 -0.36 -0.39 -0.61 0.04 2.9 -0.51 -1.09 -0.92 -1.22 -1.01 -0.84 -1.23 -1.5
-1.0 1.47 0.84 -0.73 0.58 0.63 -2.66 - -4.35 -0.24 -2.0 -2.19 -1.4 -1.04 -1.0 -0.6 0.07 1.55 -4.26 0.47 -0.55 1.33 3.28 -2.27 - - -4.2 - - -2.44 -
Bra034120 (AIF)
 -0.8 -0.24 -0.1 -0.93 0.25 0.21 -1.69 -1.05 -0.33 -0.41 -1.43 -0.3 -0.98 0.84 1.04 0.07 -0.49 0.58 -0.3 -0.61 -0.55 -0.32 2.71 -0.76 -0.88 -1.01 -0.89 -0.23 -0.22 -0.5 -0.91
Bra034296 (TRM140a)
 0.12 -0.09 0.38 -0.24 0.39 0.17 -0.39 -0.33 -0.35 -0.18 -0.39 -0.17 0.16 0.22 0.29 -0.1 0.1 0.23 -0.19 -0.11 -0.28 -0.14 1.16 -0.32 -0.16 -0.29 -0.07 -0.37 -0.13 -0.19 0.03
Bra035424 (CW9)
 -0.12 0.1 0.18 -0.24 0.69 0.35 -0.68 -0.94 0.03 0.14 -0.16 -0.0 -0.68 0.39 0.56 -0.1 -0.64 -0.03 -0.12 -0.69 -0.47 -0.34 1.75 -0.24 -0.24 -0.14 -0.35 -0.02 0.02 -0.24 -1.4
-1.62 0.78 0.73 -0.94 0.78 1.4 -0.34 -1.18 -0.98 -0.57 -1.81 -1.38 -1.49 0.31 -0.6 -0.27 0.97 -0.46 -0.38 -1.09 -1.37 0.81 2.99 -2.07 -4.0 -1.33 -0.29 -3.75 -2.8 -1.01 -
Bra036192 (CCR4)
 -1.47 0.52 0.37 -1.22 0.99 0.9 -2.28 -4.16 -0.07 0.03 -0.93 0.57 -2.34 0.64 1.12 0.43 -0.47 -0.12 -0.27 -1.14 -1.08 0.67 2.5 -1.51 -1.74 -0.79 -2.67 -0.76 -0.61 -0.58 -2.74
Bra036315 (WRKY47)
 -0.52 -0.15 -0.66 -0.78 0.84 0.9 -0.83 -1.25 -0.47 -0.52 -0.75 -0.59 -1.11 0.52 1.24 -0.28 -0.6 -0.15 -0.13 -0.41 -0.53 -0.12 1.9 -0.28 -0.42 -0.7 -0.16 0.46 0.29 -0.15 -0.68
Bra036344 (CYP71B23)
 -0.5 0.46 0.87 -0.86 0.86 1.15 -1.58 -2.31 -0.27 -0.39 -0.76 -0.24 -1.93 -0.12 0.05 -0.92 -0.74 0.41 -0.48 -0.45 -0.67 -0.18 2.17 -0.95 -0.56 -0.6 -0.64 -0.12 0.38 0.61 -0.86
Bra036750 (STOP1)
 -0.15 0.06 0.33 -0.13 0.33 0.32 -0.63 -0.72 -0.13 -0.24 -0.58 -0.33 -0.9 0.23 0.76 -0.12 -0.34 -0.35 -0.38 -0.34 -0.3 -0.33 1.63 -0.0 0.05 -0.12 -0.07 -0.01 0.13 -0.0 -0.38
-0.47 0.41 0.27 -1.28 0.6 0.64 -0.92 -2.36 0.08 -0.27 -0.31 -0.05 -1.71 0.46 0.72 0.17 0.13 0.02 -0.21 -0.01 -0.61 0.1 2.35 -0.63 -0.81 -1.69 -1.06 -0.93 -0.52 -0.38 -0.68
Bra037117 (PUB2)
 -0.27 0.36 -0.03 0.15 0.63 0.57 -0.95 -1.96 -0.08 -0.06 -0.26 -0.68 -1.66 0.24 0.68 0.18 -0.62 0.75 -0.34 -1.03 -0.66 0.28 2.45 -0.84 -0.94 -0.87 -0.87 -0.56 -0.42 -0.43 -2.63
Bra038057 (FAHD1a)
 -0.56 0.41 1.05 -1.2 0.13 0.52 -1.4 -1.6 -0.5 0.05 -0.44 -0.26 -1.55 0.63 1.21 -0.27 -0.15 -1.11 -0.43 -0.85 -1.2 0.55 2.28 -0.27 -0.52 -0.83 -1.02 -0.64 -0.04 -0.36 -0.97
Bra038610 (PAP29)
 -1.78 0.36 1.12 -0.05 0.57 0.39 -1.23 -2.19 -0.68 0.37 -1.54 -0.38 -3.25 0.23 0.74 0.9 0.87 -1.54 -0.61 -1.58 -1.41 1.09 2.66 -0.8 -1.92 -1.9 -1.07 -1.71 -1.93 -0.63 -2.28
Bra038611 (PAP29)
 -1.06 0.81 0.81 -0.48 0.44 0.75 -1.16 -2.5 -1.3 0.43 -1.18 -0.52 -2.32 -0.07 0.49 0.74 0.87 -0.29 -0.3 -1.01 -0.7 0.98 2.57 -1.18 -1.68 -1.57 -1.21 -1.64 -1.75 -0.5 -2.5
Bra039385 (CAX2)
 -0.75 -0.31 0.4 -1.38 0.26 0.54 -1.92 -2.79 -1.14 -0.9 -1.79 -1.03 -1.01 0.64 0.71 -0.67 -0.51 0.88 -1.11 -1.05 -1.07 -1.17 2.84 -0.46 -0.09 0.39 -0.36 0.18 0.01 -0.37 -0.95
Bra039424 (AUN1)
 -0.65 0.15 0.17 0.45 0.53 0.68 -0.61 -1.2 -0.43 -0.05 -0.5 -0.51 -1.14 0.58 0.69 -0.36 -0.75 0.48 -0.26 -0.82 -0.9 -0.27 2.21 -0.51 -0.29 0.5 -0.67 -0.66 -0.63 -1.28 -0.91
Bra040549 (LHT6)
 -0.45 0.91 0.14 -1.46 0.78 1.02 -1.04 -2.67 -0.4 0.18 -0.51 -0.32 -2.51 -0.33 0.57 -0.56 0.25 -1.71 -0.62 -0.7 -0.42 0.53 2.75 -0.81 -1.12 -1.84 -0.52 -1.04 -0.77 -0.16 -1.55
-3.39 -0.22 0.51 -3.08 -0.3 1.02 -2.11 -2.16 -2.09 0.86 -3.47 -0.41 -0.75 -1.72 -0.63 -0.03 0.02 1.93 -1.17 -2.48 -2.7 0.64 3.41 -1.3 -1.79 -2.68 -1.64 -2.39 -1.7 -1.73 -3.96
Bra040642 (ATL6)
 0.15 0.76 0.65 0.2 0.53 0.13 -0.98 -1.09 -1.26 -0.37 -1.11 -0.55 -2.29 0.25 0.21 -0.74 -1.14 -0.24 -0.58 -0.17 -1.28 -0.43 2.06 -0.56 -0.92 -0.13 -0.44 -0.1 0.5 1.28 -0.61

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.