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Heatmap: Cluster_166 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000383 (CHIQ1)
 4.13 3.82 4.02 3.85 7.7 5.66 5.07 4.87 4.44 5.56 5.04 5.33 6.98 8.3 7.15 7.94 6.46 26.05 16.66 6.43 5.28 6.38 5.51 5.13 5.51 5.36 5.52 4.96 5.11 4.88 5.13
0.52 0.74 0.14 0.26 0.66 0.79 0.28 0.28 0.56 0.1 0.14 0.42 0.26 0.81 0.36 0.44 0.5 12.73 3.11 0.25 0.53 0.24 1.6 0.79 0.82 0.38 0.56 0.62 0.91 0.47 0.24
0.52 0.78 1.04 0.8 2.31 1.23 0.87 0.88 0.99 1.31 1.08 1.21 1.79 1.26 0.97 1.44 1.38 14.91 4.95 1.17 0.61 0.77 1.51 1.52 1.26 0.98 1.09 1.91 1.27 0.99 0.67
2.17 0.88 0.97 0.69 4.19 2.85 1.23 0.81 1.93 1.12 1.03 0.95 1.78 2.37 2.71 1.89 2.33 31.61 15.9 2.34 0.97 1.24 6.37 1.87 1.1 2.21 1.2 2.03 2.47 1.24 0.83
Bra001807 (AtSEC62)
 1.66 1.01 1.56 0.76 2.36 1.43 0.76 0.82 0.83 1.19 1.14 1.93 1.39 1.61 2.1 1.84 1.24 12.21 5.11 1.43 0.64 1.34 1.38 0.55 0.53 0.53 0.68 0.76 0.74 0.87 0.66
0.04 0.01 0.05 0.01 0.25 0.36 0.14 0.08 0.15 0.14 0.08 0.1 0.36 0.34 0.39 0.22 0.22 4.45 0.66 0.11 0.14 0.15 0.44 0.24 0.15 0.13 0.15 0.28 0.1 0.09 0.15
0.5 0.15 0.13 0.0 2.93 2.57 0.13 0.26 0.71 0.03 0.49 0.2 0.4 5.53 7.59 0.25 0.59 23.69 9.89 0.36 0.12 0.56 1.33 0.42 0.58 0.09 0.45 0.92 0.53 0.3 0.32
Bra004294 (ENDO2)
 0.06 0.05 0.08 0.02 0.07 0.04 0.02 0.01 0.09 0.0 0.0 0.01 0.4 0.04 0.16 0.04 0.04 20.09 1.78 0.01 0.04 0.0 2.51 0.06 0.12 0.07 0.06 0.19 0.0 0.15 0.13
Bra004404 (SBH1)
 3.72 5.08 4.95 2.99 8.1 6.55 3.64 4.38 4.79 4.72 4.58 5.69 4.11 7.04 9.21 5.0 4.78 39.67 12.76 4.8 3.46 4.81 8.84 5.41 5.69 4.44 6.2 6.21 6.45 8.35 8.04
Bra005526 (FBP)
 1.01 0.61 0.5 0.53 1.22 1.63 0.29 0.22 0.59 0.48 0.39 1.0 0.83 0.44 0.98 1.32 1.22 36.05 8.8 0.4 0.76 1.05 1.12 0.38 0.42 0.4 0.18 0.47 0.32 0.46 0.72
Bra005800 (SGO2)
 4.16 3.14 2.07 2.09 4.36 3.44 1.08 1.03 1.62 1.52 2.3 1.6 1.49 2.83 3.75 2.15 1.9 26.78 8.68 1.73 1.6 1.78 5.46 4.08 2.86 3.13 3.06 4.06 4.4 3.81 4.31
Bra006201 (IQD11)
 3.48 4.22 5.21 3.26 10.52 4.54 4.6 5.74 5.45 4.52 5.66 5.02 6.07 6.95 5.09 4.04 3.66 21.66 8.03 4.49 3.4 4.29 7.22 5.9 5.13 5.17 4.64 7.38 6.93 6.11 4.15
Bra006315 (MUR5)
 2.04 2.75 1.71 2.2 5.94 4.76 2.25 3.56 2.45 6.15 2.84 2.91 7.51 3.97 4.96 6.91 8.2 55.32 11.39 2.87 3.58 4.12 5.94 2.2 2.19 2.6 2.51 1.97 1.38 3.11 3.04
Bra006505 (C3HC4)
 6.05 3.87 4.71 5.0 7.87 8.97 4.9 3.56 4.35 5.59 4.11 4.67 4.12 7.25 8.51 3.86 4.68 32.92 18.81 7.54 4.58 5.4 6.0 4.84 4.71 3.39 4.46 4.94 5.0 4.21 4.12
Bra006864 (PFK7)
 4.12 4.16 2.65 1.89 14.89 21.12 5.99 1.4 6.74 5.93 4.69 5.05 2.77 13.59 14.08 7.11 6.24 60.11 25.01 7.04 5.33 8.18 17.86 6.57 5.53 3.76 5.92 7.52 6.93 4.13 4.55
Bra006952 (GFS1)
 10.31 6.83 8.12 6.54 18.07 13.67 8.76 6.88 13.5 19.08 13.78 15.76 11.19 18.75 19.37 14.08 12.98 68.42 23.3 12.71 10.5 15.2 19.88 13.29 13.83 10.03 13.7 12.42 10.75 13.77 17.29
0.42 0.54 0.34 0.31 0.77 0.53 0.18 0.17 0.47 0.34 0.44 0.34 0.17 0.77 0.53 0.3 0.28 4.2 0.47 0.24 0.2 0.27 0.83 0.27 0.16 0.25 0.17 0.36 0.42 0.58 0.51
Bra007797 (USP)
 15.45 14.31 11.52 13.04 18.0 14.38 9.12 9.96 11.86 11.75 11.26 11.49 14.34 18.7 17.27 12.69 11.75 55.71 29.88 12.39 10.77 12.67 13.79 12.46 12.08 13.43 11.29 14.04 14.53 11.79 11.7
Bra008066 (PS2)
 2.55 1.04 0.9 0.25 21.56 28.28 7.15 12.05 22.43 13.46 17.99 30.85 18.08 36.08 39.08 17.14 27.71 1398.53 365.67 41.73 34.15 28.54 11.74 42.66 42.75 31.38 34.19 49.97 31.13 35.48 20.24
Bra009316 (GDPD6)
 0.0 0.0 0.02 0.01 0.44 0.97 0.27 0.74 0.41 0.18 0.58 0.42 1.41 1.42 0.49 0.75 1.35 176.27 45.07 1.31 0.66 0.53 0.37 0.45 0.26 0.24 0.55 0.31 0.25 0.28 0.46
Bra009837 (SHN3)
 0.0 0.0 0.0 0.0 0.91 0.21 0.25 0.05 0.45 0.76 0.18 0.33 0.18 0.28 0.46 0.45 0.34 14.11 2.25 0.5 0.6 0.58 0.5 0.06 0.22 0.12 0.09 0.14 0.0 0.06 0.13
45.94 50.89 65.02 35.07 31.53 21.61 16.21 13.49 16.61 28.85 19.88 25.22 18.75 9.58 22.91 18.57 27.18 319.71 103.66 29.37 19.24 26.31 35.41 22.88 19.38 21.32 22.34 15.17 12.96 35.91 28.41
Bra010728 (ROC1)
 44.12 36.9 27.44 28.26 61.25 96.68 216.77 131.08 136.54 145.83 132.53 136.84 281.29 116.29 187.92 196.14 269.3 5208.99 1137.3 202.9 146.42 165.87 174.61 259.51 259.89 183.11 249.26 114.73 123.99 187.61 401.09
Bra011187 (IDF1)
 3.13 3.46 3.64 3.09 8.04 8.67 4.66 4.45 5.1 3.33 3.71 5.19 4.26 12.02 11.69 4.98 6.5 76.34 26.78 8.92 5.69 5.45 6.48 5.22 6.06 3.58 7.42 4.65 6.39 4.81 5.46
1.93 5.96 4.42 2.87 3.76 1.67 2.3 1.85 2.84 2.43 3.21 2.6 4.12 2.73 1.94 3.26 2.79 36.37 8.3 3.34 3.47 4.25 7.46 2.09 1.86 1.3 1.58 1.29 1.53 1.15 1.3
0.02 0.0 0.02 0.0 0.61 0.71 0.11 0.12 0.1 0.09 0.14 0.14 0.15 0.09 0.33 0.39 0.41 208.38 50.99 0.83 0.19 0.07 0.04 0.2 0.06 0.03 0.04 0.15 0.06 0.05 0.03
Bra013829 (FC2)
 24.56 21.4 23.68 21.15 34.55 32.53 22.91 23.19 26.06 24.18 24.22 23.65 23.31 37.03 40.0 27.49 25.41 75.23 54.36 28.36 23.05 26.45 28.71 22.27 22.06 18.83 19.72 18.57 21.48 19.22 21.89
1.13 0.75 0.89 0.06 2.94 6.49 0.53 0.48 0.8 0.81 0.59 0.58 0.27 1.98 1.89 2.29 1.83 33.98 14.1 1.07 1.13 1.62 0.28 0.59 0.35 0.19 0.36 0.37 0.45 0.15 0.49
3.09 4.07 3.46 2.01 7.96 9.81 5.79 6.54 6.3 5.7 4.62 6.51 7.53 14.76 16.54 9.83 8.24 50.59 26.81 8.65 7.8 7.16 2.11 3.72 2.75 3.09 3.49 1.7 3.6 1.84 3.04
Bra015637 (PGM)
 1.56 1.23 1.26 1.38 3.46 2.79 1.49 1.29 1.69 1.75 1.08 0.9 3.46 4.64 6.1 2.68 1.99 40.34 13.89 1.88 1.6 1.86 2.95 0.75 1.03 0.64 1.02 0.64 0.58 0.37 0.59
13.93 17.53 22.17 21.18 25.29 13.87 30.01 18.38 33.46 46.98 35.81 39.68 50.49 24.99 31.83 54.83 62.38 299.77 77.31 40.04 29.37 35.43 24.52 24.29 24.02 19.06 19.28 9.09 5.62 13.37 14.8
1.31 0.5 1.34 0.72 9.53 7.06 1.81 1.63 1.04 1.96 2.3 1.52 5.24 6.17 10.21 8.16 6.06 73.88 19.74 6.13 3.42 3.34 1.62 0.62 1.08 0.28 0.85 0.59 0.3 0.56 0.44
Bra016448 (TMT1)
 3.97 3.98 4.3 3.37 8.09 4.02 2.5 3.21 2.93 3.41 2.94 2.99 4.43 5.78 6.01 4.74 3.3 19.37 9.53 3.37 2.88 3.0 6.64 3.36 3.01 3.33 3.25 5.04 3.73 4.24 3.21
0.0 0.11 0.17 0.04 0.19 0.19 0.62 0.21 0.29 0.64 0.39 0.26 0.54 0.24 0.51 0.69 0.77 38.66 9.36 2.14 1.54 1.27 2.46 0.77 1.01 0.3 0.81 0.14 0.19 0.55 0.63
Bra017104 (Sgpp)
 1.97 1.18 1.09 1.58 3.53 5.21 2.36 0.66 1.96 2.22 1.93 1.75 2.29 4.8 5.37 2.91 2.03 63.63 13.23 1.56 2.03 1.88 3.93 4.31 3.78 3.65 3.61 5.0 2.82 1.42 0.46
Bra017200 (ADK)
 6.03 7.06 7.08 8.92 13.19 11.8 6.12 8.32 5.41 6.86 7.3 6.38 10.03 11.98 12.37 10.59 8.9 52.06 16.96 9.73 7.53 7.86 11.42 3.24 3.27 4.79 2.68 3.75 3.27 2.12 2.56
Bra018299 (MUG3)
 0.19 0.31 0.28 0.18 0.38 0.47 0.14 0.09 0.33 0.25 0.14 0.25 0.19 0.22 0.44 0.15 0.18 2.69 1.12 0.37 0.16 0.17 0.44 0.23 0.27 0.11 0.22 0.33 0.29 0.33 0.13
Bra019139 (GPP1)
 5.91 4.58 4.81 4.18 8.06 7.01 4.28 4.92 6.74 6.11 5.57 8.99 6.18 9.09 8.01 7.26 6.57 30.35 14.58 4.24 4.83 6.43 8.6 5.44 4.6 5.46 4.21 5.87 5.27 4.82 4.65
Bra020066 (HDG8)
 0.05 0.03 0.0 0.04 0.01 0.0 0.01 0.02 0.0 0.0 0.0 0.0 0.04 0.0 0.0 0.0 0.01 3.48 0.94 0.02 0.0 0.0 0.03 0.02 0.0 0.01 0.0 0.0 0.0 0.0 0.0
Bra020088 (SPX1)
 0.76 0.13 0.41 0.09 3.14 2.0 1.4 0.35 0.96 1.12 0.82 0.86 3.19 0.66 1.04 2.66 5.65 397.69 105.84 5.78 1.1 1.38 1.16 0.97 0.82 0.93 0.54 1.45 0.71 0.66 0.89
Bra020104 (MGD2)
 0.0 0.0 0.02 0.08 0.06 0.04 0.11 0.03 0.02 0.03 0.0 0.07 0.15 0.02 0.03 0.03 0.1 34.79 3.98 0.11 0.01 0.0 0.01 0.03 0.02 0.0 0.0 0.04 0.0 0.01 0.0
Bra021665 (HVT1)
 2.21 1.95 1.82 1.62 2.96 3.72 2.75 2.88 2.8 2.9 2.63 2.44 2.96 4.05 3.9 3.89 3.14 17.91 8.61 3.78 3.07 2.85 4.03 2.31 2.27 1.62 1.89 2.17 1.95 1.56 1.98
Bra022244 (PAP17)
 0.14 0.28 0.18 0.04 0.04 0.07 1.33 0.98 0.24 1.0 0.53 0.6 0.87 0.02 0.1 1.01 2.16 236.37 63.23 5.43 0.7 1.47 0.46 0.05 0.04 0.01 0.04 0.07 0.0 0.0 0.06
Bra022968 (SPT5-1)
 0.01 0.0 0.0 0.0 0.01 0.02 0.0 0.02 0.02 0.08 0.06 0.0 0.25 0.02 0.29 0.07 0.04 8.47 0.93 0.05 0.03 0.05 0.08 0.0 0.0 0.0 0.01 0.01 0.01 0.02 0.1
Bra024565 (CAR8)
 1.26 0.9 0.9 0.49 4.03 4.8 1.35 0.97 1.81 0.85 0.69 1.2 2.19 1.19 1.68 3.4 5.07 106.84 36.27 3.28 2.43 1.61 6.53 1.19 1.08 1.04 0.62 2.08 1.12 0.79 0.58
0.51 0.17 0.65 0.49 0.58 0.78 0.98 0.57 0.26 0.77 0.57 0.59 0.67 0.13 0.36 0.94 0.87 17.17 5.57 1.01 0.89 0.88 0.4 0.84 0.7 0.65 0.86 0.51 0.56 0.73 0.93
Bra026068 (GAPCP-2)
 0.96 1.75 2.17 1.06 3.85 2.19 1.35 0.98 1.24 1.27 1.48 1.01 3.64 2.26 2.66 1.95 2.66 30.55 11.15 2.19 2.25 1.14 7.87 2.51 2.81 1.83 1.89 1.89 2.04 1.9 2.68
16.85 23.63 19.35 20.53 28.38 21.66 15.74 11.75 17.05 25.66 14.14 22.06 8.9 18.99 23.23 19.5 15.82 195.93 73.18 14.93 11.37 20.64 48.12 13.87 12.0 13.9 10.28 16.63 18.83 11.37 7.96
Bra027197 (SPDT)
 0.0 0.0 0.0 0.0 0.03 0.08 0.02 0.01 0.0 0.03 0.0 0.01 0.21 0.6 0.49 0.12 0.0 3.28 0.64 0.04 0.02 0.02 0.1 0.0 0.01 0.0 0.0 0.03 0.0 0.0 0.03
19.11 21.59 15.78 16.11 32.36 35.92 23.89 21.05 23.75 24.56 22.63 24.49 20.8 26.8 40.02 33.77 33.03 124.64 41.21 21.71 22.08 28.9 26.63 16.65 17.17 15.84 17.07 16.19 13.68 14.66 13.21
0.82 0.69 0.87 0.28 2.11 1.58 0.43 0.27 0.54 1.2 0.59 0.94 0.86 0.52 0.96 2.17 2.87 42.47 16.63 2.38 1.62 1.02 2.03 0.52 0.6 0.53 0.5 0.68 0.58 1.27 0.93
0.67 0.45 0.71 0.63 2.08 1.23 2.28 1.68 1.46 1.85 1.49 2.19 2.47 1.92 1.51 2.3 1.43 9.32 3.57 2.07 1.26 1.38 1.94 1.87 2.13 1.23 1.83 2.86 2.3 2.87 2.19
Bra029950 (CID10)
 0.64 0.72 0.99 0.39 2.33 1.58 0.68 0.73 1.98 1.73 1.63 1.5 1.28 2.3 2.18 1.97 1.92 11.49 6.75 1.93 1.46 1.07 0.37 0.99 1.03 0.73 0.46 0.79 0.73 0.77 1.03
Bra030945 (PPC1)
 16.48 18.88 12.23 12.65 33.03 21.37 9.43 10.53 16.57 16.14 13.67 16.22 13.5 21.85 23.13 16.61 11.98 102.61 31.38 12.15 11.83 13.48 26.5 11.84 12.31 11.64 12.62 15.35 14.47 17.44 14.17
Bra031002 (PEPC1)
 9.45 7.55 9.39 2.44 0.36 0.32 5.49 3.08 2.2 3.16 2.45 5.22 2.53 0.0 0.11 1.08 5.87 499.22 93.91 4.57 2.67 2.33 1.62 0.24 0.32 1.82 0.67 0.6 0.37 1.18 0.18
6.5 4.61 4.57 6.46 20.14 28.78 17.28 10.19 16.38 14.27 13.67 12.33 10.92 33.62 33.31 23.55 19.53 104.93 54.74 22.95 15.76 18.1 9.35 14.61 14.06 10.04 12.53 16.17 15.5 8.3 9.08
4.3 3.92 2.69 3.05 7.02 6.87 4.39 3.89 4.68 5.14 4.01 4.36 5.01 8.62 10.3 6.46 5.53 26.84 11.37 4.51 3.85 4.89 6.8 4.3 3.85 3.35 3.84 3.88 4.36 3.91 5.02
0.01 0.01 0.0 0.01 0.35 0.04 0.02 0.01 0.05 0.03 0.06 0.01 0.13 0.18 0.04 0.09 0.03 4.3 0.8 0.07 0.02 0.06 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0
19.01 17.85 17.73 16.35 30.01 28.62 15.65 14.06 21.11 17.3 17.84 15.44 18.28 26.01 29.21 19.52 19.82 68.3 46.08 17.76 17.48 18.73 27.38 22.33 17.22 18.32 17.55 22.77 22.41 17.23 18.11
Bra033535 (AMSH3)
 0.28 0.06 0.05 0.13 0.18 0.55 0.21 0.24 0.13 0.17 0.2 0.04 0.12 0.04 0.1 0.26 0.38 2.58 1.42 0.26 0.22 0.07 0.03 0.0 0.02 0.0 0.0 0.06 0.03 0.02 0.02
0.03 0.12 0.01 0.0 0.1 0.11 0.01 0.02 0.08 0.02 0.05 0.01 0.06 0.05 0.28 0.03 0.03 6.04 1.75 0.12 0.03 0.08 0.2 0.08 0.06 0.0 0.07 0.12 0.08 0.08 0.08
Bra034073 (PAH1)
 4.37 3.45 3.3 2.66 6.7 6.74 3.9 2.94 4.74 4.05 4.06 3.94 2.78 6.84 7.0 5.59 4.68 30.26 9.37 4.66 4.29 4.7 5.15 4.85 4.94 3.89 4.58 5.68 6.21 4.66 5.23
Bra034307 (PAP12)
 4.15 5.38 6.55 4.75 6.6 3.32 3.61 5.23 4.04 5.81 3.14 4.92 6.36 2.83 5.52 5.96 7.18 76.18 28.06 4.56 4.36 4.52 3.03 2.62 3.09 3.15 2.48 2.73 2.67 3.7 4.52
Bra035722 (APC2)
 4.29 3.54 4.26 2.99 11.24 9.39 4.57 4.09 6.37 7.75 6.22 6.23 6.33 8.75 9.8 9.79 8.64 34.5 15.54 7.46 5.38 6.5 6.08 6.53 6.56 5.25 6.04 7.42 7.04 8.6 8.02
1.17 0.3 1.43 0.2 5.75 10.44 6.14 2.76 5.7 5.2 3.31 5.03 3.6 7.58 9.63 4.24 6.0 78.92 32.74 11.01 6.86 6.15 21.14 9.97 7.72 3.83 6.24 10.24 15.36 5.56 4.5
Bra035967 (GDPD3)
 0.13 0.26 0.04 0.06 0.34 0.22 0.17 0.13 0.35 0.19 0.18 0.3 0.25 0.41 0.36 0.3 0.42 29.85 3.7 0.29 0.15 0.18 0.73 0.4 0.3 0.25 0.34 0.33 0.45 0.41 0.61
Bra036978 (ITPK2)
 2.35 1.01 1.09 2.5 5.49 7.48 1.43 1.0 2.88 1.04 3.36 1.7 1.54 2.09 1.59 2.06 1.5 22.44 14.6 1.35 3.01 1.45 2.64 4.06 2.77 1.47 1.63 3.68 4.14 1.26 1.37
Bra037192 (IBS2)
 0.37 0.4 0.36 0.31 0.9 0.72 0.37 0.25 0.16 0.28 0.31 0.15 0.34 0.49 0.75 0.39 0.23 3.58 1.32 0.28 0.21 0.18 0.46 0.27 0.36 0.32 0.15 0.32 0.22 0.18 0.2
Bra037791 (UMAMIT21)
 0.86 0.64 1.18 0.65 3.86 2.69 0.83 1.08 1.51 0.89 0.93 1.37 2.34 2.35 2.34 2.3 2.05 12.78 5.45 1.59 1.75 1.53 2.32 2.5 2.56 2.15 2.56 2.97 1.67 2.23 2.26
6.14 6.15 5.65 4.97 11.43 10.45 4.86 2.5 5.92 4.22 3.28 5.53 4.07 8.58 8.52 6.52 5.6 65.46 27.35 8.23 6.29 6.09 2.9 4.06 4.17 4.84 1.89 5.3 5.71 3.14 3.45
Bra039305 (PUB33)
 4.41 4.84 7.82 2.86 9.06 11.92 4.08 2.94 4.52 3.85 3.68 4.05 2.2 10.62 13.86 5.43 5.4 43.4 21.38 5.27 3.99 4.63 12.49 3.44 3.38 3.28 3.2 3.61 5.02 3.26 2.41
Bra040704 (SRG3)
 1.07 1.56 1.53 0.79 1.27 1.12 1.76 2.07 1.06 2.18 1.53 1.07 3.51 0.64 1.2 3.3 3.9 414.85 130.63 6.9 1.54 1.52 4.04 1.89 2.18 2.15 2.52 1.61 1.69 1.76 1.99

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)