Heatmap: Cluster_384 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
-0.14 0.12 0.15 -0.09 0.46 0.11 -0.26 0.03 -0.22 -0.02 -0.38 -0.1 0.48 0.04 0.34 0.21 0.1 0.11 -0.32 -0.34 -0.3 0.0 0.48 -0.17 -0.17 -0.05 0.02 -0.13 -0.13 -0.22 -0.23
Bra003352 (VHA-D)
-0.01 0.21 0.27 -0.0 0.44 0.13 0.01 0.0 -0.56 0.07 -0.09 -0.06 0.31 0.36 0.09 0.12 0.08 0.06 -0.02 -0.21 -0.23 -0.06 0.14 -0.25 -0.28 -0.32 -0.21 -0.24 -0.23 -0.0 0.01
Bra007157 (UBC14)
0.06 0.21 0.23 -0.27 0.41 0.23 -0.53 -0.37 0.21 -0.14 -0.01 -0.12 0.54 0.21 0.53 0.38 0.04 0.2 -0.15 -0.63 -0.37 -0.14 0.36 -0.1 -0.16 -0.37 -0.24 -0.32 -0.32 -0.26 -0.12
0.37 0.16 0.59 0.11 1.22 0.85 -0.2 -1.65 0.18 -0.62 0.27 -0.18 1.38 -0.3 0.55 0.03 0.38 0.43 -1.17 -1.19 -0.22 -0.62 0.25 -0.69 -0.94 -1.1 -1.14 -0.58 -0.83 -0.82 -0.24
Bra011976 (OTU1)
0.98 -0.51 -0.28 -1.16 0.77 0.39 -0.09 -0.55 0.53 -0.24 0.22 0.52 1.67 -0.48 0.31 0.41 0.36 1.33 0.08 0.18 -0.39 -1.0 0.22 -3.4 -2.1 -0.44 -1.63 -1.33 -3.26 -1.47 -1.4
-0.32 -0.08 -0.1 -0.33 0.57 0.15 -0.05 0.15 -0.2 -0.01 -0.36 -0.21 0.28 0.29 0.37 0.24 0.35 0.16 -0.36 -0.41 -0.31 -0.17 0.73 -0.23 -0.46 -0.28 -0.13 -0.07 -0.01 -0.08 -0.07
Bra037068 (PBD1)
-0.21 0.47 0.37 -0.04 0.66 0.04 -0.39 -0.16 -0.21 0.15 -0.19 0.07 0.58 0.11 0.33 0.11 0.08 -0.08 -0.2 -0.27 -0.32 -0.36 0.39 -0.13 -0.26 -0.37 -0.19 -0.02 -0.25 -0.23 -0.4
Bra037442 (SLD5)
-1.13 0.78 0.59 -0.39 0.76 0.01 -0.91 -0.8 -0.98 -0.2 -0.37 -0.6 1.07 0.17 0.3 0.28 -0.08 0.14 -0.63 -0.75 -0.39 0.44 1.15 -0.37 -0.56 -0.42 -0.73 -0.19 -0.91 -0.15 0.6
Bra038678 (FOLB1)
0.39 0.45 0.6 -0.2 0.85 0.48 -0.61 -0.24 -0.59 -0.19 -0.22 -0.31 0.92 0.41 0.11 -0.05 -0.06 -0.0 -0.02 -0.41 0.09 -0.24 -0.28 -0.23 -0.53 -0.32 -0.54 -0.34 -0.36 -0.56 0.07

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.