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Heatmap: Cluster_384 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
10.11 12.1 12.39 10.46 15.34 12.06 9.28 11.41 9.56 11.0 8.55 10.42 15.49 11.5 14.15 12.91 11.98 12.02 8.92 8.82 9.05 11.18 15.5 9.92 9.9 10.78 11.31 10.16 10.2 9.58 9.5
Bra003352 (VHA-D)
 60.72 70.61 73.39 60.86 82.55 66.66 61.41 61.2 41.37 64.03 57.3 58.59 75.58 78.41 64.88 66.24 64.72 63.62 60.05 52.81 52.09 58.56 67.29 51.19 50.4 48.77 52.67 51.54 52.16 60.87 61.66
Bra007157 (UBC14)
 22.44 24.87 25.28 17.88 28.69 25.22 14.95 16.69 24.86 19.47 21.42 19.76 31.21 24.82 31.05 27.93 22.17 24.74 19.46 13.89 16.67 19.52 27.53 20.07 19.28 16.6 18.27 17.21 17.3 18.02 19.86
1.89 1.64 2.2 1.58 3.42 2.64 1.27 0.47 1.66 0.95 1.77 1.29 3.8 1.19 2.14 1.5 1.91 1.97 0.65 0.64 1.26 0.95 1.74 0.91 0.76 0.68 0.66 0.98 0.83 0.83 1.24
Bra011976 (OTU1)
 0.22 0.08 0.09 0.05 0.19 0.15 0.11 0.08 0.16 0.09 0.13 0.16 0.36 0.08 0.14 0.15 0.14 0.28 0.12 0.13 0.09 0.06 0.13 0.01 0.03 0.08 0.04 0.04 0.01 0.04 0.04
2.71 3.2 3.16 2.69 5.0 3.76 3.26 3.74 2.93 3.35 2.63 2.91 4.11 4.12 4.36 4.0 4.32 3.78 2.64 2.55 2.73 3.0 5.61 2.88 2.45 2.78 3.08 3.21 3.36 3.19 3.22
Bra037068 (PBD1)
 22.17 35.4 33.1 24.85 40.32 26.25 19.46 22.86 22.05 28.42 22.43 26.78 38.18 27.56 32.23 27.68 27.14 24.23 22.2 21.27 20.46 19.91 33.62 23.31 21.31 19.77 22.46 25.16 21.52 21.76 19.41
Bra037442 (SLD5)
 0.6 2.25 1.98 1.0 2.22 1.32 0.7 0.76 0.66 1.15 1.02 0.87 2.76 1.48 1.62 1.59 1.24 1.45 0.85 0.78 1.0 1.78 2.92 1.02 0.89 0.98 0.79 1.16 0.7 1.18 2.0
Bra038678 (FOLB1)
 34.83 36.12 40.27 23.01 47.67 36.93 17.37 22.44 17.63 23.3 22.8 21.37 50.16 35.28 28.63 25.59 25.41 26.46 26.11 19.96 28.23 22.43 21.81 22.6 18.35 21.29 18.18 20.95 20.67 17.96 27.75

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)