1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_246 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
0.18 0.31 0.33 0.07 0.4 1.0 0.32 0.33 0.44 0.74 0.52 0.6 0.22 0.95 1.37 0.65 0.64 0.93 0.58 0.7 0.54 0.63 0.04 0.14 0.22 0.2 0.16 0.1 0.12 0.12 0.07
Bra001531 (mtE2-2)
 13.95 11.95 7.72 9.75 17.91 17.82 12.54 11.91 14.29 16.44 13.87 16.53 14.24 18.2 20.09 16.58 12.93 10.71 12.15 12.08 13.92 13.58 13.17 9.49 8.47 7.82 7.69 8.62 7.87 8.71 6.62
8.47 6.3 5.61 7.31 16.23 25.71 13.73 9.93 19.09 14.24 16.91 15.42 10.36 27.47 29.61 20.11 18.38 16.08 20.59 19.56 16.14 14.73 6.43 13.38 12.45 9.54 10.55 14.56 17.39 10.43 10.08
39.29 77.35 32.85 44.94 92.9 132.2 96.7 81.94 77.86 58.95 72.43 61.31 104.16 110.09 106.65 89.5 86.74 84.82 79.29 77.93 73.71 71.58 34.45 48.81 44.95 33.68 40.52 53.53 60.52 31.49 44.0
Bra003066 (UBC10)
 302.8 286.46 295.58 318.16 473.96 472.43 309.62 295.66 378.25 336.05 320.52 330.68 314.91 494.09 586.98 382.49 331.56 399.57 335.58 350.85 312.84 413.76 334.67 283.65 299.17 257.73 294.55 281.52 345.66 273.66 262.45
Bra003246 (CYP94D2)
 2.7 2.26 2.14 2.42 4.8 8.4 3.13 2.55 4.9 2.99 3.53 4.07 2.71 10.31 4.86 4.58 3.23 3.85 4.69 6.31 4.88 4.7 3.63 2.47 2.46 1.99 2.28 3.21 3.2 1.85 2.66
Bra003569 (TPR1)
 4.67 5.11 7.75 5.41 16.59 14.46 7.0 6.92 9.91 9.59 9.44 8.99 7.87 16.53 20.27 10.55 7.26 7.82 7.25 10.15 6.19 10.36 4.16 6.6 6.39 6.16 6.31 6.26 8.02 4.7 4.16
53.94 34.79 40.04 47.04 90.15 151.28 68.71 51.73 88.29 63.9 73.5 65.59 42.63 122.83 134.04 64.87 61.41 44.4 95.6 84.43 74.42 79.04 23.75 42.49 41.48 26.44 35.2 45.8 54.14 28.7 35.63
Bra004282 (EAP1)
 0.27 0.18 0.32 0.13 2.56 2.04 0.48 0.41 1.83 1.13 1.28 1.43 0.52 3.1 2.86 0.96 0.87 0.35 1.06 1.55 1.14 1.56 0.03 0.73 0.66 0.16 0.32 0.18 1.16 0.55 0.44
Bra004408 (HVA22C)
 29.48 22.64 19.24 19.5 55.37 45.18 25.09 22.79 34.75 25.11 37.07 28.69 50.87 59.49 71.08 43.14 33.98 57.14 50.56 36.98 41.01 37.36 23.12 27.57 22.98 23.4 23.86 25.67 25.38 21.1 28.9
Bra005673 (MDL2)
 460.4 428.93 398.02 408.29 753.06 747.7 511.48 432.96 802.45 668.79 719.16 751.46 685.37 950.2 961.81 704.78 653.26 566.11 680.95 670.63 664.71 709.19 401.35 530.63 494.12 438.81 488.84 428.03 453.85 347.95 389.36
Bra006693 (MBD7)
 3.31 4.59 3.64 4.26 7.19 9.3 5.47 4.88 6.55 6.37 5.69 6.71 6.04 11.1 10.52 8.03 8.36 6.97 7.38 6.35 7.94 7.18 3.68 5.08 5.93 3.66 4.65 5.03 5.06 5.15 4.36
Bra007729 (CYCP1;1)
 20.57 17.98 18.33 17.34 30.81 32.26 27.82 28.29 23.87 27.27 28.67 26.5 32.98 36.95 36.31 33.03 30.72 29.47 21.97 31.05 26.5 28.78 13.52 18.55 19.92 13.41 17.86 13.86 16.19 14.19 19.1
1.16 0.51 0.77 0.96 3.23 2.6 2.0 1.9 2.36 1.73 2.02 1.64 1.79 4.1 2.88 2.73 1.88 1.53 2.59 2.95 1.93 1.8 0.82 1.19 1.38 0.86 1.24 1.68 2.07 0.94 0.79
Bra008403 (ST1)
 9.16 6.51 8.13 9.32 20.31 20.38 11.65 7.96 18.03 12.37 16.42 14.32 9.99 27.0 28.14 18.09 15.78 14.66 16.37 18.36 15.29 16.84 5.25 10.14 12.92 8.68 10.14 8.79 13.02 8.94 9.36
Bra008551 (PPa5)
 3.86 3.43 3.54 2.76 8.89 9.01 6.74 5.78 5.37 7.59 7.82 7.67 10.41 12.69 11.63 8.76 6.82 11.45 7.27 6.05 6.85 6.89 4.84 2.12 2.13 3.88 3.46 2.71 2.36 2.94 2.31
Bra008839 (CRN)
 1.61 0.64 1.28 1.18 5.44 7.01 4.74 3.44 3.1 1.93 3.17 2.51 4.43 4.4 8.04 4.95 4.34 2.8 4.39 3.03 3.7 2.73 2.87 2.31 2.41 1.25 1.73 1.85 2.64 1.56 2.16
10.77 9.4 8.57 8.61 14.76 20.71 8.46 11.12 9.84 9.03 7.45 7.93 7.69 18.58 21.48 9.8 11.94 7.46 10.57 8.8 11.79 8.67 6.57 7.75 7.55 6.41 6.94 8.57 10.85 7.83 9.15
Bra010783 (LKS1)
 4.29 3.75 3.98 2.25 4.54 6.73 2.55 3.41 5.44 4.83 5.73 5.62 2.55 7.77 9.02 4.53 3.56 5.47 6.12 4.26 4.34 5.75 0.67 0.47 0.41 0.27 0.5 0.69 0.49 0.36 0.49
6.93 4.34 5.22 2.91 15.56 11.61 8.74 9.27 10.4 8.92 10.38 9.81 18.58 20.03 18.55 11.97 9.94 18.02 11.81 11.78 9.59 10.99 5.66 3.71 3.43 2.82 3.54 2.93 2.85 3.13 3.72
19.66 25.57 24.14 17.4 45.41 38.73 23.82 16.93 45.95 41.12 36.86 47.42 31.86 56.3 59.96 30.63 30.48 34.93 43.94 34.58 36.2 41.42 21.33 21.97 21.87 10.59 18.64 16.16 22.82 18.57 13.54
Bra012110 (MAPKKK5)
 3.63 4.36 4.69 3.12 8.33 9.0 5.76 4.44 6.44 5.56 5.27 5.63 5.43 9.54 13.2 7.54 6.35 5.75 6.35 6.28 5.56 6.41 5.19 4.91 4.33 3.57 4.58 4.81 5.29 4.27 3.28
14.44 11.35 10.53 12.89 15.81 27.77 17.91 13.61 18.41 14.26 17.31 16.68 12.18 22.0 23.83 20.94 18.27 13.36 20.63 21.05 20.81 18.29 10.56 11.48 12.54 8.08 11.35 13.07 13.77 8.2 10.37
Bra013076 (BLH7)
 19.96 12.32 14.85 14.78 30.88 37.11 23.03 22.43 31.81 22.98 30.19 25.14 20.22 35.12 42.96 23.93 22.22 20.72 28.22 33.6 22.26 26.78 13.77 21.9 22.29 15.78 20.65 22.24 25.61 21.28 21.61
Bra017473 (NF-YB2)
 82.67 67.12 68.78 73.82 188.77 255.63 133.34 87.53 172.69 141.62 174.73 123.8 99.29 335.64 351.03 225.79 206.29 83.77 209.35 239.57 179.45 183.05 24.82 121.37 113.36 151.65 107.45 107.91 131.2 82.08 90.98
12.89 13.2 12.12 11.98 23.32 30.67 17.29 11.83 21.63 18.1 15.02 20.61 16.74 30.31 30.14 21.7 18.47 13.69 23.96 17.37 18.23 19.88 9.74 12.13 13.26 11.39 11.89 14.19 13.64 11.12 17.44
Bra020137 (TSL)
 2.22 2.48 2.64 2.27 4.5 5.23 3.16 3.09 3.71 3.54 3.44 3.17 3.31 5.33 5.57 4.14 3.78 4.17 3.45 4.06 3.66 3.93 3.43 2.61 2.92 2.65 2.78 2.92 3.27 2.44 2.69
Bra020342 (UCP2)
 5.95 5.85 5.21 6.03 11.89 10.71 7.76 7.83 10.4 7.77 8.32 8.27 9.39 10.97 13.32 10.21 8.77 8.87 9.01 8.9 8.87 10.37 6.84 5.75 5.57 4.87 5.11 5.16 6.51 5.45 5.8
Bra021122 (UVR3)
 1.3 0.86 0.87 2.0 5.05 8.62 6.26 7.28 5.36 5.46 3.52 4.84 6.95 17.78 12.87 6.46 4.55 7.49 6.18 13.71 7.05 7.7 2.09 1.86 1.16 0.97 1.26 2.79 1.54 0.5 0.9
Bra022186 (AAE7)
 37.67 35.05 48.98 42.29 66.02 115.6 66.29 52.15 63.84 61.42 68.11 52.56 58.28 126.67 135.16 90.99 73.04 31.86 64.06 71.66 69.26 65.51 30.9 41.28 42.79 38.39 43.98 32.37 42.24 29.69 38.27
Bra022235 (CNBT1)
 4.27 4.74 4.75 4.2 8.85 14.1 7.42 6.38 9.4 7.59 7.41 7.89 4.39 17.52 20.3 9.83 7.62 7.19 11.3 9.48 6.47 9.77 5.24 4.4 4.29 3.09 4.4 4.85 6.3 6.38 4.11
Bra022903 (PAP13)
 0.68 0.45 0.79 0.52 2.78 3.12 2.37 1.52 2.32 1.71 2.36 1.56 3.22 2.97 3.61 3.79 2.25 4.09 3.32 2.98 1.92 2.05 1.09 0.66 0.52 0.51 0.4 0.54 0.5 0.34 0.65
Bra023205 (SAE1A)
 0.2 0.15 0.52 0.68 1.19 4.03 2.08 1.57 1.83 1.82 1.95 2.27 2.54 5.04 5.16 3.15 3.2 2.26 3.43 1.47 2.23 2.82 0.2 0.18 0.37 0.04 0.29 0.19 0.09 0.14 0.32
Bra025294 (LBD25)
 29.95 19.23 15.86 14.57 55.04 79.88 34.55 24.61 71.18 49.04 55.35 63.97 35.81 64.64 80.96 52.99 39.86 35.25 60.78 62.49 54.79 59.07 16.05 40.19 34.75 29.08 32.14 38.26 45.29 24.87 31.17
Bra025733 (BES1)
 23.13 25.39 29.81 29.57 54.75 62.72 30.69 23.91 62.66 46.27 60.02 50.94 39.58 97.93 84.52 47.89 34.04 54.24 86.09 83.04 83.6 65.88 24.43 32.85 35.96 32.24 29.21 40.33 41.64 21.97 28.08
5.72 3.83 5.91 3.87 16.39 22.1 17.02 13.94 12.8 22.31 22.45 19.37 17.65 37.94 29.94 20.21 19.09 14.91 12.13 25.93 19.08 17.91 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra026250 (PAWH1)
 5.0 6.74 3.78 6.69 10.53 15.01 9.77 6.67 13.29 9.82 10.59 9.45 6.72 19.65 18.56 9.86 7.55 5.2 10.4 7.56 8.13 6.21 3.06 4.63 3.83 3.64 4.12 5.13 6.34 3.6 4.51
Bra026367 (HTA2)
 101.36 108.49 91.57 93.0 171.45 162.47 103.48 77.53 144.18 116.28 128.05 132.13 191.87 214.07 222.07 145.09 137.15 160.67 171.06 160.39 159.33 159.24 117.89 130.54 110.75 103.48 101.86 96.74 106.75 78.02 95.84
Bra027721 (GTB1)
 6.59 5.2 5.49 5.92 14.17 13.72 8.66 7.89 10.0 6.48 7.54 6.57 8.1 16.53 21.04 10.48 8.72 11.27 10.78 9.64 7.82 6.83 3.46 3.4 3.31 2.57 3.93 2.91 4.12 2.5 2.67
0.16 0.63 0.13 0.53 2.16 4.97 0.54 0.18 3.68 1.71 1.65 1.15 1.32 6.17 4.97 2.88 0.59 0.97 3.2 3.69 4.87 3.25 0.0 0.0 0.27 0.2 0.15 0.3 0.07 0.0 0.21
Bra030872 (SAGL1)
 7.29 7.53 8.22 9.5 16.56 28.29 16.35 8.96 15.33 13.73 9.05 12.51 10.78 35.21 40.2 16.13 13.43 12.51 17.19 21.85 14.82 14.23 11.66 10.03 8.56 7.81 8.92 9.76 12.89 7.81 6.74
28.69 29.59 32.83 26.64 46.31 39.21 23.0 24.9 31.37 28.21 29.08 33.18 32.85 45.52 49.53 30.13 28.84 34.55 28.37 29.94 27.79 31.01 25.67 25.44 26.26 25.22 25.92 26.74 28.34 24.03 25.15
Bra033140 (GPX6)
 226.78 193.93 152.22 136.25 324.3 315.88 172.51 124.57 243.64 197.08 190.07 221.34 124.6 308.38 365.07 168.18 164.3 307.33 260.75 171.83 174.21 172.79 114.4 130.56 115.58 102.59 116.99 170.48 171.9 169.12 141.97
Bra033276 (ORM1)
 22.7 25.2 25.25 21.34 37.58 41.57 21.26 21.38 32.59 28.56 26.14 32.8 19.65 43.67 44.63 23.77 27.19 34.65 31.01 29.79 25.12 29.27 25.39 21.57 20.32 19.13 19.32 21.69 24.17 21.16 20.42
Bra033474 (RK1)
 3.99 2.64 2.72 3.74 8.67 12.55 7.25 6.73 13.39 9.42 10.4 10.36 5.43 14.51 14.82 11.0 10.03 5.15 10.61 11.08 9.9 11.08 0.75 1.37 1.43 0.92 1.26 1.58 2.06 1.7 1.81
1.12 1.41 1.71 1.24 5.14 4.91 1.45 2.91 2.71 2.42 3.8 3.32 2.95 6.68 7.03 4.21 3.02 3.07 3.4 3.34 3.28 3.57 1.14 1.93 1.97 1.56 1.6 1.63 2.2 1.52 1.34
Bra033881 (WDL3)
 11.28 7.4 5.95 9.84 19.67 18.82 20.24 19.35 19.89 17.57 16.79 16.18 18.19 28.26 25.77 20.55 14.7 18.27 23.88 21.65 17.03 15.15 6.77 10.81 12.05 9.61 9.33 11.84 10.32 5.42 5.04
Bra034821 (DGD1)
 38.94 33.61 34.99 30.32 79.67 131.61 68.34 71.93 57.38 52.22 53.89 44.05 47.26 118.89 117.57 72.66 75.75 61.08 85.89 58.44 67.72 59.44 20.7 47.79 47.74 29.83 44.06 47.83 65.07 35.53 41.97
Bra034997 (GTB1)
 6.59 5.2 5.49 5.92 14.17 13.72 8.66 7.89 10.0 6.48 7.54 6.57 8.1 16.53 21.04 10.48 8.72 11.27 10.78 9.64 7.82 6.83 3.46 3.4 3.31 2.57 3.93 2.91 4.12 2.5 2.67
8.98 6.62 6.93 4.91 12.44 17.58 7.02 7.36 12.26 9.66 10.73 9.77 6.02 21.66 22.26 13.21 11.02 12.27 11.6 12.82 11.29 10.09 7.4 8.6 8.65 8.1 8.43 9.76 10.88 10.02 9.92
Bra036255 (MLO1)
 31.85 33.24 22.83 26.01 41.59 48.27 30.91 29.56 42.0 38.92 43.3 38.02 31.37 57.33 55.49 44.5 37.2 33.2 38.87 44.32 44.3 45.27 23.2 29.22 28.89 26.83 29.51 34.26 32.98 23.19 23.48
Bra037257 (PP2C49)
 15.25 12.38 17.34 15.77 64.67 70.1 36.63 30.32 40.07 42.46 28.88 34.43 42.29 105.99 71.27 41.57 29.8 42.61 74.37 49.01 56.84 43.75 25.14 29.85 31.28 17.39 26.68 18.83 22.09 23.53 30.47
Bra037405 (SAUR31)
 67.85 82.67 53.68 41.58 229.22 295.75 123.92 123.71 95.47 82.93 107.18 90.46 169.63 270.3 189.23 155.51 107.97 176.49 149.47 120.52 152.07 154.37 31.84 88.04 84.65 65.81 85.42 79.82 77.43 47.97 62.01
Bra037461 (CB5-D)
 242.51 254.28 244.92 226.82 382.57 430.38 258.65 271.34 358.57 310.13 321.64 355.38 328.04 460.46 476.65 356.85 319.37 293.51 332.64 337.78 328.16 375.87 220.05 240.88 228.85 215.8 236.09 203.72 237.36 226.47 247.58
Bra038964 (SBP1)
 60.79 66.66 51.38 55.89 91.16 117.47 67.99 57.67 88.15 76.11 72.89 75.46 53.02 124.8 137.09 83.96 71.93 70.8 100.15 75.98 82.18 90.73 49.02 63.81 63.29 58.4 69.46 79.53 77.67 68.92 79.6
Bra039504 (SK18)
 7.68 11.05 8.24 4.29 20.56 21.51 13.55 14.32 15.55 13.6 15.59 16.35 19.21 22.55 26.54 18.96 17.08 22.42 15.05 18.44 16.75 18.17 3.64 7.97 5.3 1.28 2.27 3.8 5.69 3.51 5.32
Bra040449 (CCD1)
 141.34 127.64 97.36 132.14 159.9 234.67 176.94 155.4 171.38 155.66 161.26 157.55 151.39 233.88 227.53 185.54 167.09 149.78 188.26 175.72 164.41 168.33 95.28 128.84 132.81 119.28 124.71 143.0 139.46 101.07 125.19
23.57 22.94 20.65 23.42 38.72 44.33 38.9 36.97 41.37 38.19 30.86 35.26 37.49 43.72 44.1 45.76 31.8 28.66 33.68 39.31 32.34 32.16 25.36 23.93 25.0 19.89 22.34 23.32 21.06 17.18 17.94

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)