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Heatmap: Cluster_120 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000066 (CIPK22)
 - - - - - - - - 4.54 - - - - - - - - - - - - - - - - - - - - 2.95 -
- - - - - 1.13 - 1.31 2.27 - 0.94 - 2.4 - - - 2.85 - - 2.28 - - - 1.14 - - - - - - -
Bra003952 (AKR2B)
 - - - - 2.72 - - 1.86 3.74 - - - 1.92 - - 1.87 - - - - - - - - - - - - - - -
Bra004597 (EEL)
 - - - - - - 3.08 - 3.44 - - - - - 3.55 - - - - - - - - - - - - - - - -
Bra004682 (ZRK6)
 -3.06 -2.05 0.6 - - 0.83 0.9 0.06 1.68 -0.17 0.68 0.48 -2.24 0.21 0.05 -0.4 0.0 -0.41 -3.7 -0.4 -0.42 1.82 0.48 -2.0 - 0.79 -0.59 -0.63 -1.65 0.74 -0.65
Bra005642 (ARI10)
 - - - - 0.64 1.57 0.5 - 3.16 - - - - - - - 1.77 0.49 - - - 3.04 - - - - 0.54 - - 0.68 -
Bra005718 (AtRabE1b)
 -3.27 -2.32 -3.9 -2.81 -2.03 0.86 0.08 0.99 1.96 1.15 0.87 1.46 -0.12 0.97 1.41 0.21 0.81 1.13 0.77 -0.41 -2.44 -0.25 -2.7 -3.75 -3.63 -3.92 -5.67 -3.34 -5.06 -6.64 -3.82
Bra005720 (MT2B)
 -0.45 -0.44 -1.09 -0.84 0.42 0.87 -0.57 -0.41 0.74 0.27 0.05 -0.15 0.07 0.41 0.64 -0.31 -0.1 -0.27 0.79 -0.1 0.14 0.07 -0.64 0.36 0.24 -0.13 0.14 -0.11 -0.42 -1.05 -1.02
- -2.47 - - -2.57 -2.67 -0.8 - 1.61 - - - -0.8 -2.3 -1.42 - - - - - - -1.14 1.24 0.28 1.91 1.44 1.28 1.28 2.15 1.55 1.56
-1.85 - - -0.63 -1.96 0.58 -2.17 -0.09 1.46 -1.08 -0.75 -0.51 - 1.38 1.51 -0.16 0.41 1.32 -3.09 -0.46 0.84 0.86 -0.05 0.76 -0.12 -1.23 -0.3 -3.0 0.24 -0.22 0.05
- - - - - - - - 2.75 - - - - 1.17 - - 2.27 - 2.21 1.16 - 2.5 - - - - - - - - 2.22
- - - - - - - - 4.0 - - - - - - - - - - 1.98 - - 3.47 - - - - - - - -
1.13 - -0.78 1.0 3.1 0.79 0.74 - 0.76 0.17 - 0.29 - -0.99 - 1.12 -0.55 -0.09 1.23 - -0.42 1.17 -0.76 - - - - - - - -
Bra008361 (EXP21)
 - - - - - - - - 4.43 - - - - - - - 3.24 - - - - - - - - - - - - - -
- - - - 2.9 1.67 - - 2.42 2.69 - - - - - 0.99 - - - - - 0.58 0.72 - - - 0.71 - 0.87 - -
Bra009830 (KNS2)
 -2.2 -1.73 -2.46 -2.94 -1.03 -1.28 0.3 -0.64 0.95 -1.44 0.26 0.02 1.44 1.17 -0.6 0.49 1.19 0.41 1.45 0.33 0.23 1.22 -0.39 -2.13 -1.57 -1.95 -1.8 -2.73 -1.62 -1.15 0.97
- - - - 1.88 - - 1.57 2.55 0.93 -0.18 - 1.98 -0.67 0.2 - 1.07 0.51 - -0.93 -0.96 -0.07 -0.93 0.86 - -1.03 -1.03 - - -0.89 -0.72
- - - - - - - 1.14 2.33 - 1.63 - - 2.16 0.56 0.45 0.31 - 2.06 - - - - 0.37 - - - - - 2.4 0.45
Bra011730 (PLP1)
 -1.13 - 0.87 - 0.75 - - - 3.22 - - -0.63 - - - - 1.76 0.04 -1.81 - - - 3.44 -1.57 -1.28 - - -1.33 - - -1.43
Bra012561 (COILIN)
 - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - -
Bra013290 (PUP6)
 - -0.22 1.35 2.86 -1.64 - -1.86 -1.73 2.52 1.0 - 0.77 2.28 - -0.4 -1.42 -1.48 0.65 - - - - 1.06 - - - - - - - -
Bra014145 (CAR5)
 1.51 - - - - -0.39 - -0.18 2.51 -0.5 - -0.49 0.81 - 1.89 -0.2 0.79 - - - - - 1.25 1.86 - - 0.59 - -0.32 1.6 -
Bra014287 (TGG4)
 - - - - -0.19 0.69 0.28 1.37 2.89 0.17 -0.42 - - - - - -1.73 - 0.85 - 2.72 -0.34 - -0.36 - 1.69 - 0.02 -0.1 - -
Bra014364 (ALA6)
 -2.0 -2.08 0.18 -2.0 -0.07 0.84 -0.41 0.13 2.06 -0.17 -0.3 -0.83 0.5 0.39 0.8 - -0.72 0.9 -2.57 -0.39 1.27 -2.63 -0.14 -0.89 -0.9 -0.87 -0.92 0.58 -0.64 -0.02 0.55
Bra014545 (PFN3)
 - - - - - - - - 3.91 - - - 4.0 - - - - - - - - - - - - - - - - - -
Bra015440 (MRF3)
 - - - - 0.15 -0.86 - - 2.29 - - - - - - - - - 0.11 - -0.76 - - 0.13 2.26 0.56 1.49 0.54 1.44 2.34 1.76
Bra015982 (NMT)
 - - - - 2.41 - 0.08 - 2.03 0.34 0.26 0.33 0.53 1.82 - - - - - - - 1.6 0.6 - - - 2.23 - 1.39 - -
Bra016518 (ERF17)
 -1.36 -1.99 -2.04 -0.78 -2.43 -1.64 -0.85 0.38 1.3 0.18 0.94 -0.38 0.7 1.06 -1.61 -1.26 -1.4 0.5 0.96 0.91 0.94 0.59 -1.88 -0.19 -0.18 0.13 0.33 -1.11 0.23 -0.53 -0.55
Bra018494 (MRP1)
 - - - - 3.19 - - - 3.55 - - - - 1.95 - - 1.56 - - - - - 1.73 - - - - - - - -
Bra018676 (DWA2)
 - - -20.67 - 2.87 - - - 3.49 - - - -7.12 - - - - - - - - - - - - -17.67 - - - 3.64 -21.39
Bra019535 (HTA12)
 - - - - 3.6 1.58 - - 2.74 - - - - - - - 1.75 1.56 - - - - - 1.54 - - - - - - -
Bra020525 (PHE1)
 3.01 - - 2.43 - - - - 3.43 - - - - - - - - - - - - - - - - - 2.76 - - - -
-0.43 -1.13 -1.29 -1.04 1.15 0.84 -0.6 -1.44 1.54 -0.71 0.65 0.74 -2.1 -2.71 0.58 - -0.29 -4.14 0.46 0.99 0.99 -0.42 -3.47 0.24 0.25 -0.01 0.31 0.41 0.22 -0.81 -0.98
Bra022349 (IDL4)
 - - - - - - - - 2.84 - 0.51 2.41 -0.2 1.51 0.9 - - - 0.4 0.72 0.63 - 1.68 - -0.07 - - - 1.51 - -
Bra023571 (RGP5)
 - - - - 3.47 1.09 - - 2.82 2.01 - - - - - - 1.22 - - - - 1.1 - - - - - - - 1.14 -
Bra026225 (SBT5.4)
 -2.83 -3.86 -3.4 - -1.66 0.25 -2.15 0.2 1.08 0.83 0.74 0.69 -0.36 -0.16 -0.59 -3.76 -0.83 -1.01 -1.48 1.19 0.81 0.41 -0.35 0.58 0.79 -0.7 -0.38 -0.39 -0.76 0.98 1.44
Bra027348 (CREF3)
 - - - - 3.37 - - - 4.37 - - - - - - - - - - - - - - - - - - - - - -
- - - -0.28 -0.68 2.04 -0.9 - 1.35 - - - 1.03 1.85 1.23 - 0.45 1.5 0.74 1.91 - - - -0.74 - - - -0.52 1.05 0.45 -
2.2 - - - - 1.96 - - 3.69 2.0 - - - 2.48 - - - - - - - - - - - - - - - - -
-0.08 0.88 - - - 0.49 0.81 -0.52 2.36 - 1.77 -0.64 - - 0.77 0.7 1.91 - - 1.86 -0.48 - -0.45 0.39 - - - 0.72 - - -
- - - - - - - - 3.74 1.98 - - - 2.38 - 2.32 - - 1.82 - - - - - - - - - - - -
- - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - -
Bra029694 (MAN1)
 -0.56 -4.3 -3.3 -4.79 0.36 0.92 -0.42 -2.76 2.43 0.48 -0.48 1.45 -2.23 -3.61 -2.46 -0.98 1.98 -3.0 -1.57 -1.19 -0.27 -1.12 -4.66 -0.42 0.03 -0.55 -0.85 0.41 0.37 0.89 0.25
Bra030081 (RALF4)
 - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - 3.95 - - - - - - - - - - - - 2.85 - - - - - - - - 3.05
Bra032694 (PBL24)
 - 0.73 - - - 2.3 - - 2.46 - - - 1.51 - - 1.61 - - - - - - 3.7 - - - - - - - -
Bra033087 (KIN11)
 - - - - - - - - 2.28 - - - - 2.52 - - - - - - - - - - 2.49 - 2.35 - 2.34 2.21 -
Bra033739 (AtBBE25)
 2.01 - - - 0.76 1.66 - 0.53 2.17 - - 0.58 -0.75 0.4 1.05 -0.66 - 0.31 0.22 - - - 1.39 - 0.65 - - - 1.54 - -0.77
Bra033933 (IPT1)
 -1.03 -2.07 - - -1.36 0.55 -1.51 -2.45 -0.34 -0.41 -2.54 -0.88 - - 0.08 - -0.34 -0.12 -1.29 - -1.4 - -1.41 0.45 1.19 1.55 1.02 0.83 2.28 1.95 1.37
Bra034577 (MEE45)
 - - - -0.34 - 0.87 - - 4.6 1.57 - - - - - 0.14 - - - - - - - - - - - - - - -
Bra035127 (SMB)
 -0.02 0.64 -2.19 0.45 0.64 1.04 0.07 -1.92 1.69 0.14 0.52 0.71 -0.64 0.72 0.36 -0.35 -0.73 -2.33 -1.5 -0.18 0.28 1.46 -0.39 -0.43 -1.52 -2.82 -1.61 -0.57 -1.06 -0.84 -2.59
Bra035308 (STP7)
 2.42 - - - 3.61 - - - 3.75 - - - - - - - - - - - - - - - - - - - - - -
Bra036097 (CLM)
 0.77 0.06 -0.09 -0.33 -0.29 0.12 -0.29 -0.4 0.62 -1.07 -0.21 0.39 0.22 0.78 0.58 -0.45 0.12 -0.33 0.75 0.52 0.57 0.75 -2.52 -1.05 -0.63 -0.15 0.08 -0.56 -0.69 -0.38 -1.98
Bra036331 (ARF18)
 - - - 1.06 - - 2.04 - 3.78 - 2.16 - - - - - - - 0.61 1.76 - 0.71 - - - - - - - - -
- - - - 1.96 - - - 4.51 - - - - - - - - - - - - - - - - - - 2.11 - - -
Bra037850 (OPL1)
 - - - - - - 2.39 - 4.22 - - - - - - - - - - - - - - - - - - - - - 2.83
Bra038003 (EBS7)
 - - - - - 0.76 - -1.01 0.75 2.13 0.82 0.55 - 0.9 - 0.88 2.62 -0.58 -0.35 1.65 - 0.91 -1.25 - 1.33 - - - - -1.79 -
Bra038133 (LRX8)
 -1.66 -1.6 - - - -0.85 -1.12 1.18 2.24 -1.96 - -0.74 1.19 0.93 2.65 -0.63 - -0.87 -1.05 - - -0.75 0.83 - - 0.48 0.25 -1.7 -0.23 1.69 -
- - - - - - 2.01 1.13 2.96 - - 1.65 3.46 - - - - 1.51 - - - - - - - - - - - - -
Bra039207 (RTNLB13)
 1.81 - - - - 0.47 - - 3.39 - - 0.89 - - - - - - - - - - 2.5 - - - - - - - 3.01
- - - - - - - 2.97 3.91 - - - 3.03 - - - - - - - - - - - - - - - - - -
0.98 0.85 0.18 0.87 0.65 0.62 -1.11 0.34 0.98 0.33 1.31 0.52 1.32 0.92 -5.47 -6.33 -4.92 -0.3 0.08 0.03 1.1 1.4 - -5.43 -4.34 -5.84 -5.92 -6.31 -6.55 -5.64 -5.19
- - - - - 0.81 - - 3.28 - - - - - - 1.08 - - - 3.32 1.97 1.82 - - - - - - - - -
Bra040536 (FBP)
 -0.77 - - - - -0.12 -2.27 -0.0 1.04 -0.61 1.27 0.83 0.45 0.4 0.25 0.53 0.18 1.36 -0.29 -0.16 0.8 0.55 -1.65 -1.45 -0.34 0.75 -0.76 -1.87 -0.98 -0.46 1.15

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.