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Heatmap: Cluster_228 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000442 (BOR1)
 -0.28 -0.47 -0.99 -1.0 0.15 0.2 -0.65 -0.02 -0.44 -0.31 -0.36 -0.8 0.13 0.68 0.92 0.25 -0.06 1.7 0.78 -0.33 -0.3 -0.74 0.22 -0.04 -0.22 -0.87 -0.25 -0.15 -0.5 -0.44 0.02
Bra000543 (NAT3)
 -0.44 -0.42 -0.27 -0.64 0.43 0.38 -0.73 -0.57 -0.07 -0.3 -0.14 -0.22 -0.18 0.46 0.57 -0.12 -0.08 1.36 0.58 -0.04 -0.26 -0.07 0.34 -0.42 -0.19 -0.48 -0.29 -0.13 0.07 -0.22 -0.12
-1.79 -1.4 -3.11 -3.56 0.97 0.44 -1.02 -0.03 -1.43 -0.94 -2.23 -1.15 -1.07 0.76 1.12 -0.73 0.63 2.63 1.21 0.18 -0.19 -0.31 0.49 -0.44 -1.6 -1.02 -0.71 -0.63 -0.59 -0.57 -1.31
-1.57 -2.93 -2.56 -2.79 0.98 1.39 -0.36 -1.09 -1.12 -0.98 -0.94 -1.55 -0.6 1.35 1.21 -0.08 -0.54 2.07 0.64 -0.48 -0.84 -0.65 0.42 -0.07 -0.22 -1.12 -0.9 -0.3 0.34 -0.73 -0.2
-1.3 -1.36 -2.09 -1.03 0.33 0.81 0.29 -0.27 -0.32 -0.59 -0.56 -0.48 -0.04 0.82 0.8 0.15 -0.04 1.54 1.07 -0.08 -0.26 -0.21 0.83 -0.3 -0.44 -0.43 -0.59 -0.38 -0.4 -1.07 -0.71
Bra002955 (GPT1)
 -0.14 -0.13 -0.26 -0.56 -0.07 0.34 -0.04 -0.3 -0.23 -0.22 -0.25 -0.04 -0.34 -0.38 0.23 0.21 0.05 1.55 0.45 -0.01 -0.09 -0.09 0.63 -0.17 -0.15 -0.28 -0.11 -0.53 -0.52 -0.3 -0.4
Bra004929 (TCP9)
 -1.71 -1.71 -1.91 -1.93 0.77 0.66 -1.07 -1.57 -1.13 -0.46 -0.97 -1.27 0.36 1.31 1.24 0.36 0.19 2.12 0.61 -0.24 -0.38 -0.32 0.93 -0.95 -0.75 0.16 -1.12 -0.49 -0.23 -1.6 -1.61
Bra005373 (GLCNA.UT2)
 -0.9 -0.91 -0.32 -0.99 0.29 -0.15 -0.81 -0.56 -0.0 0.1 0.17 -0.36 0.01 0.66 0.65 0.18 -0.12 1.77 0.42 -0.08 -0.48 -0.37 -0.12 -0.05 -0.09 -0.05 -0.31 -0.35 -0.21 -0.47 -0.11
Bra005403 (ABR)
 -4.86 -5.46 - - -0.39 -0.49 -2.28 -4.39 0.39 0.0 0.35 0.02 0.13 0.85 1.21 0.71 -0.17 2.93 1.01 0.53 -0.02 -0.32 0.77 -0.87 -0.86 -2.97 -1.03 -3.0 -1.97 -3.44 -3.24
Bra007784 (DBP1)
 -0.66 -0.57 -0.44 -1.27 0.09 0.14 0.14 0.3 -1.16 -1.0 -0.77 -0.54 0.49 0.62 0.94 0.24 0.14 1.77 -0.02 -0.37 -0.52 -0.41 0.92 -0.24 -0.35 -0.45 -0.43 -0.15 -0.56 -0.43 -0.4
Bra009312 (TT7)
 -8.48 -11.13 - -6.78 -0.15 0.35 0.31 -2.43 -2.8 -2.11 -2.94 -3.24 0.07 1.8 1.43 0.43 0.16 3.2 1.82 -0.36 -1.05 -1.6 -2.66 -0.99 -1.43 -2.45 -2.56 0.18 -3.05 -3.76 -4.98
-0.31 -0.14 -0.56 -0.72 0.48 0.63 -0.03 0.02 -0.55 -0.36 -0.51 -0.37 -0.12 0.54 0.55 -0.08 -0.22 1.29 0.51 -0.06 -0.14 -0.32 0.61 -0.03 -0.2 -0.43 -0.06 -0.44 -0.39 -0.94 -0.23
Bra010729 (AVI2H)
 -1.38 -1.92 -1.79 -1.21 -0.01 0.17 -0.29 -0.31 -0.45 -0.18 -0.32 -1.03 0.44 0.3 0.83 0.47 0.27 2.25 0.68 -0.22 -0.19 -0.14 -0.01 -0.26 -0.34 -0.11 -0.54 -0.65 -0.23 -0.84 -0.41
-0.48 -0.32 -0.36 -0.83 0.25 0.18 -0.03 -0.16 -0.61 -0.46 -0.76 -0.37 -0.33 0.18 0.37 0.35 0.31 1.83 0.67 0.12 -0.22 -0.17 0.19 -0.34 -0.36 -0.4 -0.33 -0.51 -0.27 -0.46 -0.04
Bra011481 (P44)
 -1.34 -2.31 -1.29 -2.03 0.48 0.44 -0.18 -0.79 -0.24 -0.14 -0.34 -0.45 0.18 1.06 0.96 0.25 -0.18 2.53 -0.04 -0.11 -0.78 -0.45 -1.76 -0.45 -0.38 -0.87 -0.49 -0.47 -0.69 -0.48 -0.13
Bra011821 (CYP79B2)
 -4.28 -2.06 0.04 -4.86 -0.08 0.47 -0.37 -1.69 -2.59 -0.65 -3.93 -1.33 -1.08 -1.73 -0.92 0.1 -0.4 2.97 -0.2 -1.13 -1.5 -0.54 1.32 1.2 0.62 -0.61 0.35 0.08 0.12 -0.01 -2.13
Bra012752 (SWEET17)
 -2.67 -2.73 -2.46 -1.8 -1.34 -0.83 -0.3 0.43 -1.25 -1.08 -1.22 -1.63 1.65 1.28 0.39 -0.5 -0.44 2.5 -0.78 -1.36 -1.09 -0.87 1.21 -0.03 0.22 0.08 -0.13 -1.04 -0.21 -0.94 0.28
Bra013122 (ITPK2)
 -0.72 -1.3 -1.66 -0.74 0.67 0.69 0.05 -0.25 -0.32 -0.5 -0.55 -0.44 0.07 0.52 0.64 -0.04 0.09 1.61 1.0 -0.18 -0.33 -0.41 0.33 -0.23 -0.09 -0.82 -0.52 -0.16 -0.09 -0.5 -0.62
Bra013714 (JR2)
 -4.78 -5.99 - -5.94 -0.08 0.32 -1.11 -1.66 -0.67 -0.28 -2.03 -2.27 0.73 0.48 1.33 0.38 -0.35 2.91 0.32 -1.09 -1.08 -0.0 -0.27 0.94 0.23 -0.61 -0.09 -0.77 -0.95 -2.15 -0.28
-2.4 -2.17 -2.78 -2.02 -0.33 -0.58 -1.13 0.37 0.15 -0.46 -0.26 -0.93 0.98 1.17 0.93 -0.03 -0.57 2.42 -0.13 -0.3 -0.32 -0.71 0.3 -0.14 -0.37 -0.53 -0.79 -0.1 0.03 -0.95 -0.23
Bra015921 (CEK2)
 -1.12 -1.46 -2.05 -2.63 1.01 1.31 -0.41 -1.17 -0.7 -0.88 -1.08 -1.05 -0.57 1.33 1.1 -0.24 -0.74 2.06 0.85 -0.39 -0.92 -0.47 0.06 0.26 -0.25 -0.92 -0.59 -0.11 -0.37 -0.88 -0.53
Bra016618 (UBP15)
 -0.36 -0.31 0.01 -0.64 0.65 0.2 -0.58 -0.63 -0.36 -0.42 -0.44 -0.41 0.26 0.55 0.57 0.33 0.02 1.52 0.48 -0.38 -0.39 -0.35 -0.33 -0.32 -0.28 -0.59 -0.33 -0.05 -0.2 -0.05 0.05
Bra017871 (CYP79B2)
 -3.82 -0.97 -0.54 -2.78 -0.01 0.71 -0.75 -1.52 -1.52 0.68 -4.32 -0.87 -1.2 -1.46 -1.28 0.19 -0.15 3.1 0.29 -0.5 -0.29 0.14 -0.42 0.94 0.51 -0.86 -0.33 -1.1 -1.16 0.49 -4.03
-4.71 -5.31 -5.4 -7.27 -0.83 0.57 -0.23 -1.7 -0.39 -1.52 -1.13 -1.19 -0.81 1.19 1.63 0.13 0.49 2.59 1.07 -0.5 -0.4 -0.66 0.97 0.08 -0.31 -1.42 -1.08 0.07 -0.45 -2.64 -1.27
Bra018307 (ROXY7)
 -1.57 -0.69 -2.17 -1.75 -0.2 1.71 -0.43 -0.31 -2.1 -1.65 -1.43 -1.57 0.61 0.5 -0.15 0.63 0.68 3.12 0.67 -1.04 0.39 -0.35 -1.99 -1.34 -1.46 -2.08 -1.55 -1.78 -3.32 -1.94 -1.11
Bra019057 (USP21)
 -0.89 -0.16 -0.4 -0.88 0.23 0.37 -0.91 -1.08 -0.2 -0.52 -0.54 -0.24 -0.37 0.69 0.69 -0.24 -0.26 1.82 0.53 -0.13 -0.61 -0.23 0.02 -0.18 -0.18 -0.27 -0.2 0.02 0.27 -0.08 -0.06
Bra019906 (SMR8)
 -2.51 -1.05 -3.87 -3.33 -0.45 -0.75 -1.17 -2.02 0.08 -0.98 -0.77 -0.34 0.47 1.56 1.03 0.47 -0.65 2.94 0.51 -2.53 -0.56 -1.51 0.05 0.01 -0.06 -1.22 -0.22 -0.2 -0.61 -1.29 -1.72
Bra022250 (RLK902)
 -2.95 -2.85 -2.87 -3.96 -0.18 0.53 -0.99 -0.96 -0.47 -0.81 -0.69 -0.92 0.19 0.71 0.97 0.63 0.16 2.14 1.41 0.02 -0.44 -0.36 -0.15 -0.02 -0.15 -1.22 -0.09 -0.18 -0.26 -0.31 0.13
Bra022717 (HL)
 -1.7 -2.32 -1.8 -2.32 0.31 0.46 -0.48 -1.16 -0.68 -0.32 -0.81 -1.01 0.09 0.83 0.8 0.72 0.31 2.16 0.73 -0.08 -0.24 -0.16 0.09 0.29 0.11 -0.74 -0.1 -0.39 -0.67 -1.22 -0.52
Bra023872 (BRT1)
 -4.31 -6.31 -5.82 -5.46 0.19 0.81 0.23 -1.02 -1.25 -1.37 -1.56 -2.24 -0.7 1.76 1.86 0.7 -0.23 2.44 1.02 0.02 -0.23 -0.75 -0.19 -0.32 -0.64 -1.95 -1.09 0.03 -0.88 -2.48 -2.63
Bra024534 (MRF2)
 -0.31 -0.37 -0.44 -0.92 0.43 0.48 -0.2 -0.21 -0.3 -0.42 -0.38 -0.52 -0.27 0.4 0.6 0.04 -0.09 1.3 0.26 -0.17 -0.27 0.1 0.59 0.04 -0.09 -0.73 -0.05 -0.24 -0.09 -0.24 -0.18
-1.25 -1.7 -1.73 -3.08 0.46 0.01 -1.31 -1.08 -0.21 -0.41 -0.42 -0.59 0.1 0.94 1.05 -0.26 -0.28 1.88 0.79 -0.44 -0.38 -0.33 1.06 -0.15 -0.07 -0.84 -0.55 -0.15 0.09 -0.19 0.17
-0.26 -1.85 -0.56 -2.55 0.09 0.01 -0.57 -1.06 -0.0 -0.68 -0.14 -0.77 -0.0 0.76 0.66 0.25 -0.1 1.71 0.27 -0.09 -0.14 -0.41 0.14 0.57 0.38 -0.09 -0.11 -0.3 -0.1 -0.24 -0.16
Bra026085 (MGT2)
 -0.31 -0.35 -0.41 -0.69 0.26 0.4 -0.03 -0.28 -0.26 -0.3 -0.3 -0.49 -0.41 0.36 0.49 0.13 -0.06 1.14 0.4 0.05 -0.31 -0.01 0.41 0.07 -0.02 -0.57 -0.33 0.02 0.21 -0.24 -0.25
Bra026968 (CCS)
 -0.81 -0.75 -1.01 -0.94 0.29 -0.06 -0.81 -0.76 -0.68 -1.05 -0.06 -1.17 0.46 0.8 1.5 0.05 -0.9 2.47 0.45 -0.53 -0.61 -0.8 0.22 -0.5 -0.44 -0.81 -0.75 -0.89 -0.38 -0.78 -0.05
-0.44 -0.17 -0.37 -0.55 0.42 0.08 -0.4 -0.23 -0.59 -0.47 -0.61 -0.75 0.46 0.62 0.7 0.36 -0.18 1.7 0.2 -0.12 -0.1 -0.31 0.1 -0.45 -0.4 -0.25 -0.45 -0.13 -0.05 -0.47 -0.35
Bra028046 (FAB1D)
 -0.08 -0.37 -0.65 -0.46 0.26 0.64 -0.24 -0.55 -0.16 -0.13 -0.27 -0.24 -0.52 0.67 0.76 0.14 0.06 1.02 0.41 -0.02 -0.22 -0.21 0.19 -0.46 -0.26 -0.25 -0.42 -0.09 0.03 -0.32 -0.18
- -6.61 -6.99 - -0.02 -0.19 -1.68 -1.44 -0.28 -2.08 0.28 -1.64 0.17 1.94 1.16 0.18 0.2 3.16 1.03 -1.11 -1.59 -1.62 -0.73 -1.51 -1.23 -2.94 -1.82 -2.03 -2.03 -1.1 0.58
Bra030419 (JR3)
 -1.06 -1.01 -0.72 -1.35 0.46 0.25 0.12 -0.51 -0.17 -0.1 -0.29 -0.14 -0.26 0.53 0.83 0.39 0.23 1.34 0.31 -0.11 -0.22 -0.06 0.74 -0.11 -0.29 -0.44 -0.27 -0.57 -0.28 -0.33 -0.31
Bra030569 (c-NAD-MDH1)
 -0.12 -0.28 -0.46 -0.49 -0.02 0.02 -0.41 -0.44 -0.13 -0.07 -0.07 -0.02 -0.15 0.34 0.4 0.01 -0.07 1.3 0.48 -0.17 -0.04 0.02 -0.18 -0.06 -0.2 -0.23 -0.07 -0.11 -0.24 -0.02 0.09
Bra032004 (UGP)
 -1.06 -1.26 -1.66 -0.94 0.14 0.19 0.15 0.0 -0.31 -0.06 -0.12 -0.16 -0.0 0.53 0.68 0.17 0.05 1.52 0.66 0.12 0.09 0.01 -0.36 -0.12 -0.08 -0.24 -0.04 -0.17 -0.49 -0.57 -0.35
Bra032395 (NF-YA7)
 -2.12 -3.06 -2.18 -2.22 -0.36 0.55 -0.84 -0.89 -0.29 -1.13 -0.67 -1.23 -1.09 1.13 1.35 0.02 -0.73 2.52 1.23 0.19 -0.66 -0.44 -0.37 0.19 -0.18 -0.8 -0.57 -0.39 0.3 -0.86 -0.86
Bra034941 (RNT1)
 -2.35 -1.85 -0.96 -2.4 0.23 0.84 0.66 -0.56 -1.67 -0.39 -2.28 -1.11 -0.37 0.27 0.59 0.62 0.09 2.66 0.56 -0.59 -0.52 -0.36 0.75 0.03 -0.25 -0.98 -0.3 -0.85 -0.79 -0.99 -1.63
-0.87 -1.04 -1.16 -1.37 0.66 0.46 -1.29 -1.36 0.01 -0.11 0.04 -0.41 -0.45 0.78 0.89 0.42 -0.18 1.56 0.52 -0.07 -0.45 -0.1 1.05 -0.29 -0.48 -0.63 -0.47 -0.12 -0.05 -0.37 -0.89
-0.34 -0.97 0.36 -0.97 -0.85 -0.9 -1.57 -1.66 -0.67 -0.59 -0.66 -0.8 -0.67 0.5 1.28 0.67 -0.19 2.71 0.31 -0.17 -0.73 0.1 1.3 -0.94 -1.2 -1.64 -1.2 -1.46 -1.31 -1.11 -0.07
Bra037271 (PIRL5)
 -1.21 -0.64 -0.69 -0.99 0.52 0.47 -2.1 -2.25 -1.07 -0.72 -1.01 -1.11 -0.1 0.62 1.22 0.23 -0.14 2.57 -0.03 -0.25 -0.61 -0.65 0.46 -0.57 -0.56 -0.5 -0.93 -0.73 -0.75 -0.81 0.87
Bra040257 (CC1)
 -1.13 -1.33 -1.53 -0.72 0.04 -0.11 0.0 0.01 -0.58 -0.53 -0.94 -0.46 0.58 0.69 0.55 0.44 -0.0 1.75 0.4 0.02 -0.3 -0.22 0.48 -0.32 -0.08 0.12 -0.45 -0.47 -0.27 -0.31 0.0

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.