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Heatmap: Cluster_267 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
2.41 2.05 2.82 2.23 4.91 5.58 2.45 2.65 3.49 3.59 2.88 2.28 3.01 8.45 6.73 4.88 3.96 10.12 2.78 3.65 2.89 3.21 3.35 1.76 1.54 1.86 1.76 1.86 1.93 4.38 6.38
Bra001781 (PUM5)
 0.23 0.17 0.2 0.1 2.03 1.88 0.45 0.17 1.17 0.32 0.47 0.34 0.66 7.4 6.45 1.0 0.38 3.93 1.53 0.72 0.36 0.41 4.31 1.93 1.8 0.75 1.2 2.18 3.79 2.02 1.57
Bra001886 (ELIP)
 8.02 3.57 1.01 7.46 85.68 237.05 208.64 110.37 32.96 14.62 25.74 17.96 85.69 470.39 426.52 104.34 70.81 427.84 83.03 83.92 34.83 44.57 175.35 61.67 41.16 28.67 28.89 68.01 35.67 13.06 16.25
Bra001972 (CCR2)
 0.91 0.78 1.5 0.8 11.1 16.62 9.89 6.98 14.32 6.87 6.69 7.89 8.52 32.23 36.97 9.49 8.51 32.56 16.38 10.38 6.33 10.56 5.91 4.35 4.85 1.95 3.92 6.66 9.34 5.14 6.13
7.77 7.03 7.1 6.7 12.15 10.38 7.0 9.08 7.35 7.17 6.65 7.25 9.85 14.52 13.53 9.8 9.32 16.37 7.79 9.06 7.64 8.2 8.97 8.32 7.93 7.89 7.37 7.38 8.96 7.8 9.04
Bra003318 (PDCB5)
 2.82 2.02 1.22 1.6 4.94 4.86 2.51 4.24 5.9 4.33 4.35 4.16 6.81 11.13 13.27 5.61 4.26 8.53 4.88 5.22 4.3 4.37 6.38 3.26 3.43 2.01 3.72 2.85 3.39 2.48 3.19
Bra003450 (BRH1)
 3.37 6.34 2.51 1.72 8.06 6.61 0.99 0.57 2.71 1.95 1.91 1.35 4.64 21.14 20.39 3.63 3.89 11.35 6.07 3.08 3.98 2.39 4.89 2.76 3.16 2.19 3.74 2.9 2.26 2.0 2.36
Bra004993 (CLC2)
 7.57 8.62 6.57 3.83 12.56 13.61 6.27 5.37 10.22 7.25 9.9 6.31 6.01 21.63 23.44 9.55 8.41 15.48 14.42 9.02 9.79 8.9 12.25 10.67 10.67 9.38 9.34 12.49 16.1 9.8 10.66
Bra005603 (ELMO1)
 31.91 35.54 33.97 39.02 68.27 55.71 40.29 46.12 48.08 48.92 49.25 42.64 49.29 85.09 80.83 55.02 47.91 87.94 56.02 48.83 53.74 53.55 52.16 40.81 44.47 40.31 39.14 34.91 33.53 30.26 27.72
Bra005775 (MDAR2)
 9.53 6.83 7.46 5.48 36.46 32.28 11.13 8.7 26.23 14.38 16.03 17.63 16.05 72.81 57.23 17.32 14.14 46.93 24.9 16.76 18.89 13.63 35.81 15.09 15.89 13.2 14.25 20.33 26.36 18.07 14.67
Bra006905 (SEX4)
 6.93 12.45 6.21 5.68 57.69 42.71 17.12 25.13 20.92 27.4 23.02 21.86 21.15 65.16 97.95 24.09 20.67 78.29 46.15 14.12 20.75 15.6 8.24 19.66 14.61 11.51 13.79 29.06 30.61 31.22 23.47
Bra007000 (LOG4)
 0.0 0.0 0.0 0.0 0.25 0.68 0.27 0.11 0.11 0.0 0.08 0.0 0.36 4.06 2.81 0.05 0.0 2.28 0.26 0.22 0.06 0.0 1.25 0.09 0.0 0.15 0.0 0.03 0.2 0.0 0.2
Bra007054 (NHL39)
 3.64 3.23 6.7 3.31 7.93 7.91 5.71 4.58 8.76 6.7 7.13 5.58 7.27 16.78 15.76 11.36 7.69 15.12 8.51 5.9 4.1 7.29 7.84 1.9 3.12 2.7 2.15 3.22 3.49 2.76 1.92
Bra007542 (GATA4)
 1.03 1.98 2.57 0.84 3.95 3.6 2.16 2.67 4.02 2.75 3.63 2.73 5.41 9.82 7.63 3.99 3.52 10.95 4.4 5.8 3.7 3.14 6.17 3.26 4.22 3.33 4.6 3.12 4.71 4.49 8.32
Bra008052 (HAP2C)
 4.71 4.37 2.71 1.33 15.67 16.69 3.58 2.33 8.77 6.9 6.53 7.89 4.49 26.69 23.95 7.76 6.0 21.12 11.4 9.73 7.69 9.35 12.41 12.14 13.21 8.47 12.7 15.65 14.05 10.22 11.49
1.15 0.8 0.99 0.67 4.58 7.42 1.05 1.51 2.36 2.65 2.12 2.19 6.91 12.29 14.34 4.55 4.78 12.75 4.29 4.04 2.48 2.86 3.94 1.9 1.72 1.66 0.82 1.44 1.67 1.41 2.25
0.95 1.04 1.15 1.21 8.78 9.78 5.73 5.55 9.54 8.12 9.21 8.38 16.83 20.35 22.71 15.06 10.98 23.45 13.46 11.01 8.82 9.21 7.67 5.44 4.55 3.09 4.77 3.22 5.41 4.14 6.48
Bra010694 (PCBER1)
 1.7 0.68 0.73 0.65 9.29 9.16 2.8 1.85 4.05 3.22 3.43 1.88 3.49 14.56 13.86 4.69 3.29 13.66 7.32 3.26 2.8 3.05 5.17 3.82 3.61 2.24 2.94 5.43 4.86 1.7 1.85
Bra011704 (APP1)
 0.96 0.69 0.4 0.7 3.86 7.36 1.5 2.3 2.85 2.4 2.3 1.92 3.83 10.3 12.97 2.88 2.89 5.32 3.02 2.96 4.37 2.82 8.43 1.57 1.4 1.15 1.05 1.03 1.74 1.12 1.76
3.09 1.78 2.83 0.85 12.58 13.38 5.77 3.81 9.27 11.55 8.49 7.2 7.6 17.72 24.32 15.7 8.47 23.84 15.2 10.09 9.61 8.0 5.83 6.04 2.72 3.11 2.27 3.92 6.11 2.58 2.32
Bra013606 (MRB1)
 3.54 2.18 2.37 1.05 9.25 9.35 6.78 5.76 6.6 5.08 4.15 4.6 2.63 14.89 20.31 5.66 3.93 19.83 9.77 5.34 3.83 4.99 4.52 7.04 7.1 3.99 6.1 9.7 10.43 9.81 8.47
3.78 4.67 3.19 3.93 26.47 53.65 16.74 14.29 28.39 25.96 23.01 24.95 33.01 100.1 77.06 20.48 35.61 87.62 48.71 30.17 28.39 23.08 39.07 22.31 16.17 15.44 28.89 14.21 26.24 23.68 72.41
Bra014003 (RALFL31)
 12.56 11.66 9.28 15.13 31.9 35.36 17.31 18.96 18.56 20.04 21.7 18.89 31.71 52.58 52.33 29.53 24.41 49.8 36.55 30.58 28.9 23.83 41.3 32.79 25.92 24.43 21.03 14.19 18.78 16.71 19.27
11.23 9.7 9.68 9.1 17.36 15.45 10.04 10.51 15.57 14.21 14.14 12.94 16.04 29.64 28.33 18.41 14.36 30.33 18.73 14.92 12.26 13.91 12.96 11.48 10.67 8.88 10.26 11.17 12.82 10.11 9.92
5.16 4.04 4.77 4.59 29.95 28.7 12.23 10.2 15.48 12.14 12.69 10.56 16.74 46.96 46.6 20.4 15.7 43.3 21.38 14.57 14.1 15.35 13.83 13.89 11.71 8.19 10.97 13.76 13.09 6.93 8.27
Bra016031 (HAP2C)
 1.87 1.6 1.53 0.87 9.16 11.51 2.61 1.39 5.03 3.67 4.12 4.87 3.21 16.38 14.87 5.39 4.51 11.73 6.47 4.33 4.17 4.34 9.17 7.45 7.8 4.88 6.12 8.56 8.45 5.73 7.75
Bra016382 (UGT85A5)
 0.64 0.13 0.23 0.28 4.08 12.47 3.37 2.98 4.71 3.94 2.55 3.08 10.41 21.89 15.91 4.36 6.14 16.58 13.3 3.56 4.11 4.36 6.79 2.55 1.97 1.33 1.43 3.66 5.52 2.38 2.96
4.39 5.93 4.54 4.44 9.55 7.55 4.6 6.43 5.17 5.3 5.14 5.43 8.33 10.47 8.77 6.34 6.52 8.69 4.77 4.92 5.44 5.35 9.33 5.05 6.25 5.93 5.92 5.87 6.43 6.2 6.36
Bra016795 (BAG5)
 1.33 2.92 2.81 2.6 8.08 7.41 3.86 3.94 3.81 4.46 4.64 4.94 5.57 10.38 11.01 6.84 6.54 8.2 6.67 4.45 3.83 3.65 4.65 6.2 6.82 3.48 5.27 5.77 4.88 4.25 7.5
0.07 0.03 0.1 0.01 0.3 0.33 0.12 0.02 0.27 0.22 0.14 0.15 0.05 0.45 0.75 0.25 0.17 0.68 0.19 0.15 0.13 0.14 0.05 0.04 0.13 0.02 0.11 0.3 0.34 0.16 0.19
8.14 8.13 10.28 5.51 15.95 15.11 10.9 10.93 10.38 9.16 9.72 10.09 11.24 20.06 19.82 14.06 11.82 17.86 13.86 11.16 10.11 9.87 13.27 12.79 13.0 10.46 12.22 14.5 12.57 12.83 12.67
0.81 0.62 0.96 0.89 1.1 2.32 1.1 0.71 1.83 1.14 1.44 1.14 1.2 4.08 4.89 1.53 1.64 3.58 2.69 1.46 1.12 1.57 1.89 1.29 1.45 0.82 1.44 0.96 1.51 1.07 1.61
Bra021527 (NF-YA6)
 4.57 2.12 1.95 1.46 27.4 29.77 3.37 3.41 13.19 7.06 7.78 7.78 8.98 49.01 41.18 14.92 7.07 29.89 16.85 13.17 10.31 11.71 14.49 11.78 10.92 6.61 8.25 14.7 14.99 5.63 10.14
Bra021865 (AHL10)
 3.53 2.73 4.12 3.13 6.37 5.72 2.33 3.15 3.69 3.35 3.11 3.29 5.2 7.09 8.78 3.95 3.15 6.12 4.21 3.08 3.15 3.66 6.53 2.81 3.56 2.82 2.48 3.61 3.51 2.62 3.57
Bra022545 (DYAD)
 1.67 1.24 1.33 1.09 2.68 2.64 1.17 1.26 2.02 1.61 1.54 1.42 1.13 3.79 4.1 1.94 1.61 2.55 1.97 1.59 1.46 1.53 2.04 2.03 2.07 1.34 1.68 2.15 2.55 1.72 2.11
Bra023153 (SUF4)
 13.06 12.9 15.32 8.86 15.94 19.81 10.71 11.3 14.78 13.52 13.45 12.72 15.26 23.69 28.08 16.75 13.18 22.46 15.79 13.43 12.4 13.19 20.06 13.75 13.14 10.71 13.92 13.29 14.96 13.46 14.23
Bra023407 (NEF1)
 4.06 4.6 4.33 3.44 5.79 5.75 2.77 3.88 3.66 4.6 4.15 3.97 4.99 7.57 7.37 5.23 4.56 5.8 4.32 3.94 3.75 3.9 5.39 4.31 4.43 4.82 4.68 3.84 4.58 5.06 5.84
14.5 12.39 14.07 10.21 20.99 25.99 11.17 10.37 22.57 17.85 19.11 15.29 19.09 41.59 43.41 20.64 19.1 31.76 20.36 19.76 17.02 19.22 22.44 15.2 13.78 11.0 15.38 13.54 16.26 13.1 13.81
Bra026154 (CCMH)
 3.32 3.9 3.79 2.84 9.97 14.34 5.57 1.91 7.46 5.74 5.77 7.11 5.09 17.77 20.91 12.23 6.79 18.94 13.6 9.26 6.95 9.1 11.33 5.53 4.83 3.52 4.78 5.04 5.33 5.87 7.43
Bra026631 (TMK3)
 10.43 10.09 12.12 11.28 23.18 18.83 12.1 16.79 12.81 12.85 11.02 12.92 21.34 34.87 29.08 16.88 17.18 28.96 15.88 12.35 12.73 12.08 25.33 14.53 15.54 22.21 16.15 17.96 20.49 18.48 20.72
26.22 32.02 44.13 22.3 49.57 66.21 29.9 38.99 46.81 36.07 36.26 37.32 45.39 149.38 173.06 45.56 44.9 101.04 63.54 37.52 53.73 66.55 88.01 36.94 35.91 33.59 36.67 25.58 32.92 27.89 34.89
Bra029801 (ATB' BETA)
 3.61 3.02 2.98 3.56 5.38 5.09 3.15 3.9 3.15 3.49 2.78 2.84 3.68 5.7 5.56 4.09 4.42 6.5 2.94 3.68 3.72 3.25 3.4 3.33 2.9 2.86 3.4 2.43 3.46 3.29 3.74
Bra029804 (RABC2b)
 2.83 1.47 1.25 1.79 12.25 12.53 6.83 4.19 7.75 6.89 7.42 5.13 4.53 24.47 25.16 9.96 6.53 22.41 7.9 7.39 5.77 6.93 11.56 5.93 5.55 5.33 5.22 6.35 6.97 3.55 4.02
Bra031269 (DOF2)
 3.48 2.54 1.82 1.84 11.29 10.79 4.41 2.91 6.57 3.53 4.94 4.05 2.14 13.65 13.98 4.34 2.56 8.65 9.04 5.14 4.25 4.2 4.17 9.19 6.02 4.31 5.44 6.41 9.19 6.37 4.24
Bra031430 (GLP8)
 7.31 7.82 11.01 5.49 15.23 26.6 5.47 5.22 19.33 17.27 14.51 15.4 12.44 37.6 43.26 17.6 17.13 27.54 19.31 18.43 11.96 12.31 13.51 8.26 6.95 6.04 7.77 8.57 9.66 10.13 12.34
Bra031772 (GPT2)
 1.88 1.98 0.75 1.81 1.91 5.61 1.19 1.91 2.42 2.09 3.67 1.95 11.29 21.61 24.44 3.66 1.6 8.69 1.41 2.84 4.46 1.79 6.33 1.25 1.72 2.63 1.81 1.46 0.83 0.45 0.12
Bra033911 (ELIP)
 13.2 5.46 1.28 8.26 214.45 500.19 316.59 168.17 22.98 21.76 23.74 12.58 220.62 1146.89 1068.76 136.15 99.61 739.32 124.03 100.11 69.74 49.0 405.71 96.11 71.69 40.47 37.5 141.63 54.6 24.72 25.7
Bra035416 (IAR4L)
 34.4 34.15 29.92 27.57 52.31 51.4 39.69 40.01 50.27 55.51 50.8 55.58 50.77 67.34 68.03 56.99 49.78 80.69 63.71 49.78 52.9 56.95 46.93 39.11 36.91 38.32 41.52 40.52 33.94 40.5 42.99
Bra035605 (UBC30)
 20.54 24.56 18.48 17.51 43.12 56.68 31.04 43.08 51.0 41.58 36.31 43.0 59.69 91.5 95.95 38.39 38.56 87.22 58.09 48.79 54.29 33.72 65.8 31.32 27.46 22.63 25.98 21.6 21.57 17.86 24.83
140.43 139.52 116.88 73.01 204.86 214.07 147.76 165.12 160.64 194.86 141.18 177.3 261.42 333.71 311.61 225.19 167.73 353.47 276.48 245.05 192.62 202.8 245.58 133.16 143.66 135.65 123.6 115.51 118.34 114.08 129.75
0.01 0.07 0.02 0.05 0.21 0.1 0.04 0.03 0.15 0.02 0.02 0.01 0.27 0.35 0.27 0.06 0.11 0.51 0.2 0.08 0.02 0.05 0.11 0.01 0.04 0.01 0.1 0.1 0.04 0.1 0.22
Bra037968 (NFYA5)
 1.25 0.59 0.75 0.12 9.68 8.7 1.28 1.05 4.22 2.48 3.09 1.99 1.71 17.02 13.42 3.6 3.17 7.27 6.39 3.66 3.91 3.98 2.28 7.31 5.65 4.28 4.9 5.92 6.08 3.93 6.63
6.78 5.52 3.21 4.11 6.86 6.72 5.76 5.04 7.83 6.82 6.68 8.08 6.75 20.93 17.43 5.19 3.73 9.64 10.79 7.67 6.31 5.62 8.64 6.49 6.83 8.26 6.55 5.26 5.08 7.87 8.41
Bra040092 (ERF39)
 0.62 0.19 0.64 0.23 5.64 9.76 4.85 4.81 7.1 4.55 4.99 3.84 2.92 30.13 35.53 7.66 3.98 30.43 17.08 6.87 4.53 5.0 5.55 5.89 4.11 0.82 4.87 2.93 5.33 2.4 4.38
8.2 10.08 10.73 7.96 12.94 12.96 9.28 9.55 10.67 9.5 10.13 9.53 10.04 18.86 18.0 12.68 11.15 18.72 13.71 11.38 10.56 10.0 15.95 11.86 12.34 11.41 11.71 9.83 13.34 14.14 13.38
Bra040720 (KLU)
 0.83 0.38 0.1 0.15 1.36 3.78 1.67 2.1 1.49 0.9 1.7 1.57 2.43 8.76 4.66 1.64 1.35 5.14 6.25 2.51 2.25 1.82 0.75 1.7 2.04 2.66 2.06 0.76 3.31 2.43 5.49

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)